Factsheet for Bra025216.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
vacuole 5
extracellular 6
endoplasmic reticulum 4
plasma membrane 5
golgi 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13645	Canola	extracellular	99.57	99.57
AT3G26610.1	Thale cress	extracellular	88.09	88.09
KRH74551	Soybean	extracellular	60.43	61.61
KRH69612	Soybean	extracellular	60.0	61.04
VIT_01s0127g00120.t01	Wine grape	extracellular	61.28	60.13
Solyc05g005040.2.1	Tomato	extracellular	57.45	57.32
PGSC0003DMT400035101	Potato	extracellular, golgi	57.87	56.55
GSMUA_Achr1P12720_001	Banana	extracellular	47.66	54.63
Os01t0549000-00	Rice	extracellular	32.34	53.52
KXG32718	Sorghum	extracellular	45.96	49.54
Zm00001d011156_P001	Maize	plastid	45.11	48.62
Bra008748.1-P	Field mustard	extracellular	41.28	44.19
Bra031724.1-P	Field mustard	extracellular	44.89	40.97
Bra027148.1-P	Field mustard	extracellular	46.6	40.86
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	45.11	39.92
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	45.11	39.77
Bra027926.1-P	Field mustard	extracellular	36.81	39.77
Bra018707.1-P	Field mustard	extracellular	38.94	38.77
Bra000911.1-P	Field mustard	extracellular, vacuole	38.51	37.24
Bra032600.1-P	Field mustard	extracellular	38.3	36.66
Bra029690.1-P	Field mustard	cytosol	31.28	36.21
Bra016911.1-P	Field mustard	extracellular	32.98	35.8
Bra003286.1-P	Field mustard	extracellular	32.77	35.57
Bra007332.1-P	Field mustard	extracellular	32.55	35.42
Bra033328.1-P	Field mustard	extracellular	36.81	35.23
Bra008493.1-P	Field mustard	extracellular	28.94	34.87
Bra016912.1-P	Field mustard	extracellular, nucleus, peroxisome	32.98	34.6
Bra025631.1-P	Field mustard	extracellular	30.85	34.36
Bra003555.1-P	Field mustard	extracellular	32.55	34.23
Bra012375.1-P	Field mustard	cytosol	32.34	34.08
Bra024602.1-P	Field mustard	cytosol	31.91	33.94
Bra004655.1-P	Field mustard	extracellular	30.85	33.88
Bra016213.1-P	Field mustard	extracellular	33.62	33.83
Bra016345.1-P	Field mustard	extracellular	33.62	33.76
Bra025099.1-P	Field mustard	extracellular	28.72	33.75
Bra025103.1-P	Field mustard	extracellular	28.3	33.25
Bra027211.1-P	Field mustard	extracellular	31.49	32.82
Bra001279.1-P	Field mustard	extracellular	30.43	32.72
Bra001605.1-P	Field mustard	extracellular	31.06	32.3
Bra027210.1-P	Field mustard	extracellular	31.06	32.02
Bra023600.1-P	Field mustard	extracellular	29.15	32.01
Bra011341.1-P	Field mustard	cytosol	26.38	31.55
Bra008572.1-P	Field mustard	extracellular	26.6	28.8
Bra040077.1-P	Field mustard	extracellular	18.51	23.84

Protein Annotations

Gene3D:2.160.20.10	MapMan:21.3.5.1.3	EnsemblPlantsGene:Bra025216	EnsemblPlants:Bra025216.1	EnsemblPlants:Bra025216.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009653	GO:GO:0009826	GO:GO:0009987
GO:GO:0016043	GO:GO:0016049	GO:GO:0016787	GO:GO:0016798	GO:GO:0040007	GO:GO:0045490
GO:GO:0048046	GO:GO:0052546	GO:GO:0060773	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334
UniProt:M4E8W0	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF92	InterPro:PbH1
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	TMHMM:TMhelix	UniParc:UPI000253F68F
SEG:seg	:	:	:	:	:

Description

AT3G26610 (E=4e-244) | polygalacturonase, putative / pectinase, putative

Coordinates

chrA06:-:22713734..22717744

Molecular Weight (calculated)

51162.3 Da

IEP (calculated)

8.925

GRAVY (calculated)

-0.206

Length

470 amino acids

Sequence
(BLAST)

001: MKIIKSSPLL AMLIGFIIIA AAISTISVEG RKHHVKRIKP KHRRHSRDTP TGSPAPAPYP STHDGVFDIL SFGAKGDGIS DDSKALIGAW KAACKVVGGK
101: VEIPAGKEFM VKAVTLQGPC KEETVVQIEG TLVAPTKTGS WPKSSLFQWL NFKWVSHVTI QGSGTLDARG YNWWNLDNYQ TQKNKYIPPM KPTALRFYSS
201: GNVTVRDISI VNSPLCHLKF DDSDGVKINN ITISSPENSP NTDGIHLQNT RNVEIQHSNI ACGDDCVSIQ TGSSNVHIHH ISCGPGHGIS IGSLGKDETV
301: ACVSDIIVED VSIQNTLAGV RIKTWQGGLG VVKNLTFSNI QVTDVQVPIV IDQYYCDKSK CKNQTSAVSI SDVKYNNIVG SFTAQPVRIA CSNNVPCMDV
401: DLMDIRLRPS GGIRGLQTHQ QQHALCWNSY GKTQGPLVPS SIGYCLKKSN IDGYYPKRFI ASSHEKLCPL

Best Arabidopsis Sequence Match ( AT3G26610.1 )
(BLAST)

001: MKTVKSLPIL AMLLGVIIVA AAISTVSVEG RKHHVKKIKP KHRRHSKNTP TGSPAPAPYP STNEGVFNIF SYGAKGDGVS DDSKALVGAW KAACKVVGGK
101: VEIPAGTQFL VKAVTLQGPC KEETVVQIEG ILVAPEKIGS WPNSSLFQWL NFKWVSHLTI QGSGTLNGRG YNWWNLDTYQ TQTRNKYIPP MKPTALRFYS
201: SNNVTVRDIS IVNSPLCHLK FDDSDGVKVN NITISSPENS PNTDGIHLQN TRNVEIQHSN IACGDDCVSI QTGSSNVHIH HINCGPGHGI SIGGLGKDKS
301: VACVSDIIVE DISIQNTLAG VRIKTWQGGL GVVKNLTFSN IQVKDVKVPI VIDQYYCDKS KCKNQTRAVS ISGVKYNNIV GSFTVQPVRI ACSNNVPCMD
401: VDLMDIRLRP SGGIRGLQTH QQQQALCWNS YGKTQGPLVP SSIGYCLRKS NIGGYYSQKV SRSYDKICPS

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q38958]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.