Factsheet for Bra018707.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93644	Canola	extracellular	100.0	100.0
CDY43307	Canola	extracellular	99.36	99.15
AT1G48100.1	Thale cress	extracellular	91.1	90.53
KRH36916	Soybean	extracellular, nucleus	71.61	71.31
KRH11881	Soybean	extracellular	72.25	71.19
VIT_05s0020g00420.t01	Wine grape	extracellular	71.61	70.86
Os05t0279900-00	Rice	cytosol	44.92	67.3
KRH42407	Soybean	extracellular	68.64	66.94
GSMUA_Achr8P06220_001	Banana	extracellular	65.68	66.24
KRH58524	Soybean	extracellular	68.22	65.71
PGSC0003DMT400075723	Potato	extracellular	66.74	64.81
Solyc04g008230.2.1	Tomato	nucleus	67.16	64.69
GSMUA_Achr8P22240_001	Banana	extracellular	61.86	61.22
TraesCS7B01G230600.1	Wheat	extracellular	59.53	57.7
TraesCS7A01G330000.1	Wheat	extracellular	59.53	57.58
TraesCS7D01G326800.1	Wheat	extracellular	59.53	57.58
HORVU7Hr1G078960.2	Barley	extracellular	59.32	57.26
Bra027926.1-P	Field mustard	extracellular	48.09	52.18
Zm00001d040725_P002	Maize	extracellular, vacuole	54.87	51.59
Bra032600.1-P	Field mustard	extracellular	53.6	51.53
KXG32428	Sorghum	mitochondrion	54.87	49.81
Bra000911.1-P	Field mustard	extracellular, vacuole	51.27	49.79
Bra033328.1-P	Field mustard	extracellular	51.27	49.29
Bra008748.1-P	Field mustard	extracellular	40.68	43.74
Bra031724.1-P	Field mustard	extracellular	42.8	39.22
Bra025216.1-P	Field mustard	extracellular	38.77	38.94
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	43.43	38.61
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	43.22	38.27
Bra027148.1-P	Field mustard	extracellular	42.8	37.69
KXG32426	Sorghum	extracellular	54.87	37.43
Bra029690.1-P	Field mustard	cytosol	31.99	37.19
Bra003555.1-P	Field mustard	extracellular	35.17	37.14
Bra007332.1-P	Field mustard	extracellular	33.69	36.81
Bra016911.1-P	Field mustard	extracellular	33.47	36.49
Bra024602.1-P	Field mustard	cytosol	34.11	36.43
Bra003286.1-P	Field mustard	extracellular	33.26	36.26
Bra001279.1-P	Field mustard	extracellular	32.63	35.24
Bra016213.1-P	Field mustard	extracellular	34.75	35.12
Bra025631.1-P	Field mustard	extracellular	31.36	35.07
Bra012375.1-P	Field mustard	cytosol	33.05	34.98
Bra016345.1-P	Field mustard	extracellular	34.53	34.83
Bra016912.1-P	Field mustard	extracellular, nucleus, peroxisome	33.05	34.82
Bra004655.1-P	Field mustard	extracellular	31.36	34.58
Bra008493.1-P	Field mustard	extracellular	28.18	34.1
Zm00001d009167_P001	Maize	extracellular	55.08	33.94
Os01t0329300-01	Rice	plastid	54.45	33.86
Bra025099.1-P	Field mustard	extracellular	27.33	32.25
Bra011341.1-P	Field mustard	cytosol	26.48	31.81
Bra023600.1-P	Field mustard	extracellular	28.6	31.54
Bra027211.1-P	Field mustard	extracellular	29.87	31.26
Bra025103.1-P	Field mustard	extracellular	26.48	31.25
Bra001605.1-P	Field mustard	extracellular	29.87	31.19
Bra027210.1-P	Field mustard	extracellular	29.45	30.48
Bra008572.1-P	Field mustard	extracellular	27.12	29.49
Bra040077.1-P	Field mustard	extracellular	18.43	23.84

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EnsemblPlantsGene:Bra018707	EnsemblPlants:Bra018707.1	EnsemblPlants:Bra018707.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009831	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016049	GO:GO:0016787	GO:GO:0016798	GO:GO:0030312
GO:GO:0040007	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4DQB4	PFAM:PF00295
ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF26	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence
SMART:SM00710	SUPFAM:SSF51126	TMHMM:TMhelix	UniParc:UPI000253ED68	SEG:seg	:

Description

AT1G48100 (E=3e-218) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Coordinates

chrA06:-:2418287..2420956

Molecular Weight (calculated)

50890.8 Da

IEP (calculated)

4.484

GRAVY (calculated)

-0.200

Length

472 amino acids

Sequence
(BLAST)

001: MRILSGILVV YFISTLLFGQ LIYVARGRFH YHKRRGLSDP PPPPPAVTAN PPQVPSDPYP NPNPDPAPGD SDSGCIFDVT SFGAVGDGSC DDTAAFKDAW
101: KAACAVESSV VLAPEGGVFK ITSTIFSGPC KPGLVFQLDG VLMPPDGPEE WPEKDSKSQW LVFYRLDGFT FAGKGTVEGN GQKWWDLPCK PHRGPDGSSS
201: SEPCVSPTMI RFFMSNNIEV GGLRIQNSPQ FHMKFDGCEG VSINDIQISS PKLSPNTDGI HLGNTRSVAI HNSVVSNGDD CISIGTGCSD IDIQGVTCGP
301: SHGISIGSLG VHNSQACVSN ITVRNTVIRD SDNGLRVKTW QGGTGSVSNL LFENIQMENV LNCIIVDQYY CQSKECRNET SAVRVFDVQY RNIKGTYDVR
401: SAPIHFACSD TVACTNITMS EVELLPEEGE LVDDPFCWNA YGTQETLTIP PIDCLLDGSP VVEEGYNSNP GC

Best Arabidopsis Sequence Match ( AT1G48100.1 )
(BLAST)

001: MRRLSGILVI YIISTVLFGH FTNVARARYH YHKGRHGVTH PLPPPPPPPL ETANPPDQVP SDPYPSPDPA PGDSDSGCVF DVTSFGAVGD GSCDDTAAFQ
101: DAWKAACAVE SGVVLAPEGG VFKITSTIFS GPCKPGLVFQ LDGVLMPPDG PEEWPEKDNK NQWLVFYRLD GFTFSGKGTV EGNGQKWWDL PCKPHRGPDG
201: SSSSGPCASP TMIRFFMSNN IEVKGLRIQN SPQFHMKFDG CQGVLINEIQ ISSPKLSPNT DGIHLGNTRS VGIYNSVVSN GDDCISIGTG CSDVDIQGVT
301: CGPSHGISIG SLGVHNSQAC VSNITVRNTV IRDSDNGLRV KTWQGGTGSV SNLLFENIQM ENVLNCIIVD QYYCQSKDCR NETSAVKVFD VEYRNIKGTY
401: DVRSPPIHFA CSDTVACTNI TMSEVELLPE EGELVDDPFC WNAYGKQETL TIPPIDCLLD GSPVVEEAYD SNYGC

Arabidopsis Description

Polygalacturonase At1g48100 [Source:UniProtKB/Swiss-Prot;Acc:Q949Z1]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.