Factsheet for Bra001605.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 7
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58462	Canola	extracellular	98.45	98.23
Bra027210.1-P	Field mustard	extracellular	86.28	85.53
Bra027211.1-P	Field mustard	extracellular	82.52	82.71
AT3G15720.1	Thale cress	extracellular	80.09	79.39
Bra025099.1-P	Field mustard	extracellular	39.82	45.0
Bra025103.1-P	Field mustard	extracellular	39.16	44.25
VIT_09s0002g06610.t01	Wine grape	extracellular	37.83	43.96
VIT_09s0002g06650.t01	Wine grape	extracellular	38.72	43.32
VIT_09s0002g06580.t01	Wine grape	cytosol	36.73	42.46
PGSC0003DMT400056828	Potato	extracellular	37.17	42.21
PGSC0003DMT400008955	Potato	extracellular	31.64	41.09
KRH23567	Soybean	extracellular	36.28	40.9
KXG26899	Sorghum	extracellular	36.95	39.76
Bra023600.1-P	Field mustard	extracellular	37.61	39.72
TraesCS2B01G423300.1	Wheat	extracellular	34.96	39.4
Bra008572.1-P	Field mustard	extracellular	37.83	39.4
Solyc03g116580.2.1	Tomato	extracellular	37.83	39.13
KRH09740	Soybean	extracellular	36.5	38.82
Bra008493.1-P	Field mustard	extracellular	33.41	38.72
GSMUA_Achr11P...	Banana	extracellular	35.62	38.7
TraesCS2A01G405300.1	Wheat	extracellular, nucleus	34.29	38.27
TraesCS2D01G402100.1	Wheat	extracellular	34.29	38.27
HORVU2Hr1G096130.1	Barley	extracellular	34.29	38.27
TraesCS2B01G423400.1	Wheat	plastid	29.42	37.89
TraesCS2A01G405100.1	Wheat	extracellular	34.96	37.89
GSMUA_Achr9P22320_001	Banana	extracellular	34.51	37.77
Bra029690.1-P	Field mustard	cytosol	33.85	37.68
TraesCS2A01G405600.1	Wheat	extracellular	26.33	37.3
GSMUA_Achr4P13200_001	Banana	extracellular	34.73	37.2
TraesCS2D01G402200.1	Wheat	extracellular	32.08	37.08
TraesCS2B01G423200.1	Wheat	extracellular	34.73	36.94
TraesCS2D01G402000.1	Wheat	extracellular	34.51	36.45
Bra004655.1-P	Field mustard	extracellular	34.29	36.22
Bra011341.1-P	Field mustard	cytosol	31.42	36.13
Bra001279.1-P	Field mustard	extracellular	34.73	35.93
Bra016911.1-P	Field mustard	extracellular	34.29	35.8
TraesCS2D01G402300.1	Wheat	extracellular	26.33	35.74
Bra025631.1-P	Field mustard	extracellular	33.19	35.55
Bra003286.1-P	Field mustard	extracellular	33.85	35.33
Bra024602.1-P	Field mustard	cytosol	33.63	34.39
Bra016912.1-P	Field mustard	extracellular, nucleus, peroxisome	33.85	34.15
Bra007332.1-P	Field mustard	extracellular	32.52	34.03
Bra008748.1-P	Field mustard	extracellular	32.74	33.71
Bra027926.1-P	Field mustard	extracellular	32.3	33.56
Bra012375.1-P	Field mustard	cytosol	32.74	33.18
Bra016213.1-P	Field mustard	extracellular	34.07	32.98
Bra016345.1-P	Field mustard	extracellular	33.85	32.69
Bra003555.1-P	Field mustard	extracellular	32.08	32.44
Zm00001d039668_P001	Maize	plastid	30.75	31.81
Bra040077.1-P	Field mustard	extracellular	25.66	31.78
Bra000911.1-P	Field mustard	extracellular, vacuole	34.07	31.69
Bra025216.1-P	Field mustard	extracellular	32.3	31.06
Bra032600.1-P	Field mustard	extracellular	32.96	30.35
Bra018707.1-P	Field mustard	extracellular	31.19	29.87
Bra033328.1-P	Field mustard	extracellular	31.86	29.33
Os01t0172900-00	Rice	nucleus	18.14	27.8
Bra031724.1-P	Field mustard	extracellular	30.97	27.18
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	30.97	26.37
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	30.75	26.08
Bra027148.1-P	Field mustard	extracellular	30.09	25.37
GSMUA_Achr4P06370_001	Banana	extracellular	33.63	20.16

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EnsemblPlantsGene:Bra001605	EnsemblPlants:Bra001605.1	EnsemblPlants:Bra001605.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4CBM5	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375
PANTHER:PTHR31375:SF42	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126
SignalP:SignalP-noTM	UniParc:UPI0002540A4A	:	:	:	:

Description

AT3G15720 (E=6e-215) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Coordinates

chrA03:-:17344872..17347141

Molecular Weight (calculated)

48327.1 Da

IEP (calculated)

5.220

GRAVY (calculated)

-0.078

Length

452 amino acids

Sequence
(BLAST)

001: MKKTWILNFS VFFLHIFTSS KALDVTQYGA NGDGVTDDSQ AFLKAWEAVC SGTGDGQLIV PAGMTFVLQP LKFQGSCKST PIVVQILGNM VASSRGNWEG
101: DKDQWILFSD IEGLVVEGNG VINGQGSSWW EHKGSSRPTA LKFKSCNNLR LSGLTHVDSA KAHIHINNCN GVSISNLRIN APESSPNTDG IDVAASSNVI
201: IQDCVIATGD DCIAINSGTS NIRVCGIDCG PGHGISIGSL GKDGETASVE DICVQNCNFR GTTNGARIKT WPGGSGYARR ITFSGITLDN VENPIIIDQH
301: YNNGGSEKNT DDKSSAVEVS KVVYSNFVGT SKSEYGVDFR CSTAVPCTEI FMKDVRIETP SSGSGQVAQG QCLNVRGVST LAVPGLECLA LSTDMLSSAE
401: LPEQTCMLPQ PSVQPSTRPM QDPFWVYGSG GKPHRVFDVV LTSFIFVVLY MY

Best Arabidopsis Sequence Match ( AT3G15720.3 )
(BLAST)

001: MKKTWFLNFS LFFLQIFTSS NALDVTQFGA VGDGVTDDSQ AFLKAWEAVC SGTGDGQFVV PAGMTFMLQP LKFQGSCKST PVFVQMLGKL VAPSKGNWKG
101: DKDQWILFTD IEGLVIEGDG EINGQGSSWW EHKGSRPTAL KFRSCNNLRL SGLTHLDSPM AHIHISECNY VTISSLRINA PESSPNTDGI DVGASSNVVI
201: QDCIIATGDD CIAINSGTSN IHISGIDCGP GHGISIGSLG KDGETATVEN VCVQNCNFRG TMNGARIKTW QGGSGYARMI TFNGITLDNV ENPIIIDQFY
301: NGGDSDNAKD RKSSAVEVSK VVFSNFIGTS KSEYGVDFRC SERVPCTEIF LRDMKIETAS SGSGQVAQGQ CLNVRGASTI AVPGLECLEL STDMFSSAQL
401: LEQTCMSAQS VQPRTTTQPM QDPIWVFQSR GKQLRVYNIA ILVSFISLVT YILAR

Arabidopsis Description

Probable polygalacturonase At3g15720 [Source:UniProtKB/Swiss-Prot;Acc:Q9LW07]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.