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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 8
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 6
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400056828 Potato extracellular 100.0 87.44
Solyc08g060970.2.1 Tomato nucleus 95.11 83.38
KRH23786 Soybean cytosol, extracellular, nucleus, plastid 41.38 40.0
KRH23567 Soybean extracellular 45.98 39.9
KRH14715 Soybean cytosol, extracellular, nucleus, plastid 39.66 39.77
KRG88958 Soybean extracellular 39.94 39.15
VIT_09s0002g06610.t01 Wine grape extracellular 42.24 37.79
KRH09740 Soybean extracellular 45.98 37.65
AT4G35670.1 Thale cress extracellular 42.53 37.56
AT5G44830.1 Thale cress extracellular 35.63 37.35
VIT_09s0002g06580.t01 Wine grape cytosol 41.67 37.08
CDX72553 Canola extracellular 42.82 36.97
CDY47032 Canola extracellular 42.53 36.72
CDX85471 Canola extracellular 42.82 36.7
GSMUA_Achr9P22320_001 Banana extracellular 43.39 36.56
CDY39404 Canola extracellular 41.38 36.09
Bra025099.1-P Field mustard extracellular 41.38 36.0
CDY50769 Canola extracellular 35.34 35.96
KRH48978 Soybean extracellular 30.46 35.57
CDY69377 Canola extracellular 40.8 35.5
CDY39399 Canola extracellular 40.52 35.25
KRH66273 Soybean extracellular 31.03 34.84
Bra023600.1-P Field mustard extracellular 42.82 34.81
CDY02729 Canola extracellular 42.82 34.81
Bra025103.1-P Field mustard extracellular 39.94 34.75
AT5G17200.1 Thale cress extracellular 41.95 34.68
KRH66276 Soybean extracellular 35.34 34.65
AT5G44840.1 Thale cress extracellular 38.79 34.53
CDX73440 Canola extracellular 39.66 34.5
VIT_09s0002g06650.t01 Wine grape extracellular 39.94 34.41
VIT_09s0096g00850.t01 Wine grape cytoskeleton, cytosol, peroxisome 36.21 33.96
GSMUA_Achr11P... Banana extracellular 40.23 33.65
GSMUA_Achr4P13200_001 Banana extracellular 40.8 33.65
Bra011341.1-P Field mustard cytosol 37.93 33.59
KRH66305 Soybean extracellular 37.07 33.51
Bra008572.1-P Field mustard extracellular 41.38 33.18
AT5G27530.1 Thale cress cytosol 43.39 32.97
CDY16952 Canola extracellular 40.8 32.72
CDX69397 Canola extracellular 37.93 32.67
AT3G15720.1 Thale cress extracellular 42.53 32.46
TraesCS2B01G423300.1 Wheat extracellular 37.36 32.42
TraesCS2D01G402100.1 Wheat extracellular 37.64 32.35
CDY30105 Canola extracellular 41.67 32.29
TraesCS2A01G405600.1 Wheat extracellular 29.6 32.29
CDX75239 Canola cytosol 37.64 32.27
CDX68839 Canola cytosol 37.64 32.27
TraesCS2B01G423400.1 Wheat plastid 32.47 32.19
Bra027211.1-P Field mustard extracellular 41.67 32.15
HORVU2Hr1G096130.1 Barley extracellular 37.36 32.1
TraesCS2A01G405300.1 Wheat extracellular, nucleus 37.36 32.1
CDX97703 Canola extracellular 41.67 32.08
Bra027210.1-P Field mustard extracellular 41.95 32.02
CDX97704 Canola extracellular 41.67 31.8
Bra001605.1-P Field mustard extracellular 41.09 31.64
PGSC0003DMT400001638 Potato extracellular, plastid 40.8 31.63
AT4G32370.1 Thale cress extracellular 31.03 31.58
CDY30107 Canola extracellular 41.38 31.58
CDX75843 Canola extracellular 40.8 31.35
KXG26899 Sorghum extracellular 37.64 31.19
CDY58462 Canola extracellular 40.52 31.13
PGSC0003DMT400017691 Potato extracellular 31.32 31.05
TraesCS2D01G402200.1 Wheat extracellular 34.77 30.95
TraesCS2A01G405100.1 Wheat extracellular 36.78 30.7
TraesCS2D01G402300.1 Wheat extracellular 28.74 30.03
CDY39884 Canola extracellular 38.22 29.89
PGSC0003DMT400007095 Potato cytosol 37.36 29.89
Zm00001d039668_P001 Maize plastid 37.36 29.75
TraesCS2D01G402000.1 Wheat extracellular 36.49 29.67
Os01t0172900-00 Rice nucleus 24.71 29.15
TraesCS2B01G423200.1 Wheat extracellular 35.34 28.94
PGSC0003DMT400055713 Potato extracellular 37.64 28.6
PGSC0003DMT400013344 Potato extracellular 38.51 28.39
KRH05150 Soybean extracellular 21.84 28.25
PGSC0003DMT400080722 Potato extracellular 36.78 27.83
PGSC0003DMT400077010 Potato cytosol 36.21 27.21
PGSC0003DMT400075723 Potato extracellular 37.64 26.95
PGSC0003DMT400035101 Potato extracellular, golgi 37.07 26.82
PGSC0003DMT400070039 Potato cytosol 31.32 26.59
AT4G32380.1 Thale cress extracellular 34.48 26.49
PGSC0003DMT400035162 Potato extracellular 38.51 26.22
Bra040077.1-P Field mustard extracellular 26.44 25.21
AT4G32375.1 Thale cress extracellular 29.02 23.88
GSMUA_Achr4P06370_001 Banana extracellular 39.37 18.17
Protein Annotations
Gene3D:2.160.20.10MapMan:50.3.2GO:GO:0003674GO:GO:0003824GO:GO:0004650GO:GO:0005975
GO:GO:0008150GO:GO:0008152GO:GO:0016787GO:GO:0016798InterPro:Glyco_hydro_28InterPro:IPR012334
UniProt:M0ZVC1PFAM:PF00295EnsemblPlantsGene:PGSC0003DMG400003490PGSC:PGSC0003DMG400003490EnsemblPlants:PGSC0003DMT400008955ScanProsite:PS00502
PANTHER:PTHR31375PANTHER:PTHR31375:SF42InterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulenceSUPFAM:SSF51126SignalP:SignalP-noTM
UniParc:UPI000295D97D:::::
Description
Polygalacturonase [Source:PGSC_GENE;Acc:PGSC0003DMG400003490]
Coordinates
chr00:-:30263025..30267130
Molecular Weight (calculated)
37586.4 Da
IEP (calculated)
7.873
GRAVY (calculated)
-0.166
Length
348 amino acids
Sequence
(BLAST)
001: MKGQAFIFLI CITSFLIERS LAGIFDVTRY GASGDGVHDD TQAFKQVWRA ACSDENPSIL IPSERSFLVG PITFQGPCKS TNIHIQLSGS IVAPKDPEAW
101: TGCENVCWIY FTGVAGLFIN GSGTINGNGQ RWWDTPSRTR VNGTCTKPTV VQFNYCNGLR LNGIKLVNSD DCIGINTGFS DINITGIRCG PGHGISIGSL
201: GPNNTFANVE NVYITNCHLE DTQNGVRIKS WQGGSGYARS IHFENINLKN VENPIIIDQN YCNGGHSCQP QVSAVKVSNV TYKKIYGTTS SKLAINMNCS
301: NSTACTNVEL ENIYITSVEP GKKIFATCNN VKGKASSNSP HVSCLSQG
Best Arabidopsis Sequence Match ( AT5G27530.1 )
(BLAST)
001: MEDMVTIQKN GDIPAFVRVT TQWHGLMSFP ETILRISILI NFICFGLVNG QIYNVLKFGA EGDGQTDDSN AFLQAWNATC GGEENINTLF IPSGKTYLLQ
101: PIEFKGPCKS TSIKLQLDGI IVAPSNITSW SNPKSQTWIS FSGVPGLMID GSGTINGRGS SFWEALHICN CNNLTINGIT SIDSPKSHIS IKNCHYVAIS
201: KINILAPENS PNTDGIDISY STNVNIFDST IQTGDDCIAI NTGSSSINIT QVNCGPGHGI SVGSLGADGE NAAVSDVYVT QCTFNKTTNG ARIKTWQGGQ
301: GYARNISFEN ITLINVQNPI IIDQQYTDKV LLDATKDSAV AISSVKYVGF QGTTLNEDAI MLKCSAITYC KDMVIDDIEV TMENGEKPKV ECENVEGESS
401: DNDLMRECFN SNSTFSGGSV GGFGWVYECP CVRMGGPNWR FSSRISRTFL DPSSFHVH
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K4C2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.