Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G35670.1 | Thale cress | extracellular | 60.04 | 69.8 |
| AT5G44830.1 | Thale cress | extracellular | 39.52 | 54.52 |
| AT5G44840.1 | Thale cress | extracellular | 45.85 | 53.71 |
| PGSC0003DMT400056828 | Potato | extracellular | 38.65 | 44.47 |
| PGSC0003DMT400008955 | Potato | extracellular | 32.97 | 43.39 |
| AT3G15720.1 | Thale cress | extracellular | 39.74 | 39.91 |
| AT4G32370.1 | Thale cress | extracellular | 29.69 | 39.77 |
| AT5G17200.1 | Thale cress | extracellular | 35.59 | 38.72 |
| AT5G39910.1 | Thale cress | extracellular | 31.0 | 38.07 |
| GSMUA_Achr11P... | Banana | extracellular | 34.5 | 37.98 |
| TraesCS2A01G405600.1 | Wheat | extracellular | 25.98 | 37.3 |
| GSMUA_Achr4P13200_001 | Banana | extracellular | 34.28 | 37.2 |
| KRH05150 | Soybean | extracellular | 21.62 | 36.8 |
| AT1G80140.1 | Thale cress | extracellular | 26.86 | 36.61 |
| GSMUA_Achr9P22320_001 | Banana | extracellular | 32.97 | 36.56 |
| TraesCS2D01G402100.1 | Wheat | extracellular | 31.88 | 36.05 |
| TraesCS2D01G402300.1 | Wheat | extracellular | 26.2 | 36.04 |
| KXG26899 | Sorghum | extracellular | 32.97 | 35.95 |
| TraesCS2A01G405100.1 | Wheat | extracellular | 32.53 | 35.73 |
| TraesCS2B01G423300.1 | Wheat | extracellular | 31.22 | 35.66 |
| TraesCS2B01G423200.1 | Wheat | extracellular | 32.97 | 35.53 |
| TraesCS2A01G405300.1 | Wheat | extracellular, nucleus | 31.22 | 35.31 |
| TraesCS2D01G402200.1 | Wheat | extracellular | 30.13 | 35.29 |
| TraesCS2D01G402000.1 | Wheat | extracellular | 32.53 | 34.81 |
| TraesCS2B01G423400.1 | Wheat | plastid | 26.64 | 34.76 |
| AT5G14650.1 | Thale cress | extracellular | 32.97 | 34.71 |
| HORVU2Hr1G096130.1 | Barley | extracellular | 30.35 | 34.32 |
| AT4G32380.1 | Thale cress | extracellular | 33.41 | 33.77 |
| AT3G57510.1 | Thale cress | extracellular | 31.44 | 33.41 |
| AT1G56710.1 | Thale cress | extracellular | 30.79 | 32.49 |
| AT1G80170.1 | Thale cress | extracellular | 31.44 | 32.43 |
| AT2G41850.1 | Thale cress | extracellular | 30.57 | 32.33 |
| AT3G07970.1 | Thale cress | extracellular | 30.79 | 32.12 |
| Zm00001d039668_P001 | Maize | plastid | 29.69 | 31.12 |
| AT1G70500.1 | Thale cress | extracellular | 31.66 | 30.98 |
| AT1G23460.1 | Thale cress | extracellular | 31.0 | 30.87 |
| AT3G26610.1 | Thale cress | extracellular | 31.44 | 30.64 |
| AT4G32375.1 | Thale cress | extracellular | 27.95 | 30.26 |
| Os01t0172900-00 | Rice | nucleus | 19.43 | 30.17 |
| AT1G02460.1 | Thale cress | extracellular | 31.88 | 29.74 |
| AT4G01890.1 | Thale cress | extracellular | 29.69 | 29.12 |
| AT1G48100.1 | Thale cress | extracellular | 28.6 | 27.58 |
| AT1G60590.1 | Thale cress | extracellular | 32.31 | 27.41 |
| AT1G10640.1 | Thale cress | extracellular, golgi | 31.44 | 27.07 |
| GSMUA_Achr4P06370_001 | Banana | extracellular | 34.28 | 20.82 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:50.3.2 | EntrezGene:832813 | ProteinID:AED93697.1 | ArrayExpress:AT5G27530 | EnsemblPlantsGene:AT5G27530 |
| RefSeq:AT5G27530 | TAIR:AT5G27530 | RefSeq:AT5G27530-TAIR-G | EnsemblPlants:AT5G27530.1 | TAIR:AT5G27530.1 | Unigene:At.55039 |
| UniProt:F4K4C2 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005575 | GO:GO:0005576 |
| GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 |
| GO:GO:0016798 | GO:GO:0016829 | GO:GO:0071555 | InterPro:Glyco_hydro_28 | InterPro:IPR012334 | RefSeq:NP_198105.2 |
| PFAM:PF00295 | PO:PO:0020090 | PANTHER:PTHR31375 | PANTHER:PTHR31375:SF42 | InterPro:PbH1 | InterPro:Pectin_lyas_fold |
| InterPro:Pectin_lyase_fold/virulence | SMART:SM00710 | SUPFAM:SSF51126 | UniParc:UPI0000162601 | SEG:seg | : |
Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K4C2]
Coordinates
chr5:+:9717503..9721097
Molecular Weight (calculated)
49652.5 Da
IEP (calculated)
4.551
GRAVY (calculated)
-0.114
Length
458 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDMVTIQKN GDIPAFVRVT TQWHGLMSFP ETILRISILI NFICFGLVNG QIYNVLKFGA EGDGQTDDSN AFLQAWNATC GGEENINTLF IPSGKTYLLQ
101: PIEFKGPCKS TSIKLQLDGI IVAPSNITSW SNPKSQTWIS FSGVPGLMID GSGTINGRGS SFWEALHICN CNNLTINGIT SIDSPKSHIS IKNCHYVAIS
201: KINILAPENS PNTDGIDISY STNVNIFDST IQTGDDCIAI NTGSSSINIT QVNCGPGHGI SVGSLGADGE NAAVSDVYVT QCTFNKTTNG ARIKTWQGGQ
301: GYARNISFEN ITLINVQNPI IIDQQYTDKV LLDATKDSAV AISSVKYVGF QGTTLNEDAI MLKCSAITYC KDMVIDDIEV TMENGEKPKV ECENVEGESS
401: DNDLMRECFN SNSTFSGGSV GGFGWVYECP CVRMGGPNWR FSSRISRTFL DPSSFHVH
101: PIEFKGPCKS TSIKLQLDGI IVAPSNITSW SNPKSQTWIS FSGVPGLMID GSGTINGRGS SFWEALHICN CNNLTINGIT SIDSPKSHIS IKNCHYVAIS
201: KINILAPENS PNTDGIDISY STNVNIFDST IQTGDDCIAI NTGSSSINIT QVNCGPGHGI SVGSLGADGE NAAVSDVYVT QCTFNKTTNG ARIKTWQGGQ
301: GYARNISFEN ITLINVQNPI IIDQQYTDKV LLDATKDSAV AISSVKYVGF QGTTLNEDAI MLKCSAITYC KDMVIDDIEV TMENGEKPKV ECENVEGESS
401: DNDLMRECFN SNSTFSGGSV GGFGWVYECP CVRMGGPNWR FSSRISRTFL DPSSFHVH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.