Factsheet for AT1G56710.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

endoplasmic reticulum 5
golgi 5
extracellular 8
vacuole 4
plasma membrane 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	endoplasmic reticulum, extracellular, golgi
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41695	Canola	extracellular	82.49	82.3
Bra027926.1-P	Field mustard	extracellular	82.49	82.3
CDX95284	Canola	extracellular	75.58	81.19
AT1G02460.1	Thale cress	extracellular	57.6	50.92
AT4G01890.1	Thale cress	extracellular	52.77	49.04
AT1G48100.1	Thale cress	extracellular	53.46	48.84
AT5G14650.1	Thale cress	extracellular	40.78	40.69
AT3G57510.1	Thale cress	extracellular	38.25	38.52
AT2G41850.1	Thale cress	extracellular	38.02	38.11
AT1G80170.1	Thale cress	extracellular	38.94	38.06
AT1G23460.1	Thale cress	extracellular	39.17	36.96
AT1G80140.1	Thale cress	extracellular	28.34	36.61
AT3G26610.1	Thale cress	extracellular	39.63	36.6
AT1G70500.1	Thale cress	extracellular	38.71	35.9
AT4G35670.1	Thale cress	extracellular	32.03	35.28
AT5G44830.1	Thale cress	extracellular	26.96	35.24
AT3G07970.1	Thale cress	extracellular	34.79	34.4
AT5G17200.1	Thale cress	extracellular	33.18	34.2
AT1G10640.1	Thale cress	extracellular, golgi	41.47	33.83
AT1G60590.1	Thale cress	extracellular	41.94	33.7
AT5G39910.1	Thale cress	extracellular	28.8	33.51
AT5G44840.1	Thale cress	extracellular	29.72	32.99
AT3G15720.1	Thale cress	extracellular	34.33	32.68
AT5G27530.1	Thale cress	cytosol	32.49	30.79
AT4G32370.1	Thale cress	extracellular	23.73	30.12
AT4G32380.1	Thale cress	extracellular	28.57	27.37
AT4G32375.1	Thale cress	extracellular	22.58	23.17

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EntrezGene:842127	UniProt:A0A178WM22	ProteinID:AAG09093.1	ProteinID:AEE33427.1
ArrayExpress:AT1G56710	EnsemblPlantsGene:AT1G56710	RefSeq:AT1G56710	TAIR:AT1G56710	RefSeq:AT1G56710-TAIR-G	EnsemblPlants:AT1G56710.1
TAIR:AT1G56710.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0016798	GO:GO:0016829	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	RefSeq:NP_176064.1
ProteinID:OAP19337.1	PFAM:PF00295	PO:PO:0000293	PO:PO:0001185	PO:PO:0007616	PO:PO:0009009
PO:PO:0009031	PO:PO:0009047	PO:PO:0009052	PO:PO:0025022	ScanProsite:PS00502	PANTHER:PTHR31375
PANTHER:PTHR31375:SF13	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	UniProt:Q9FXC1	SMART:SM00710
SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI00000483AF	SEG:seg	:	:

Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FXC1]

Coordinates

chr1:-:21257728..21259974

Molecular Weight (calculated)

47445.4 Da

IEP (calculated)

7.092

GRAVY (calculated)

-0.038

Length

434 amino acids

Sequence
(BLAST)

001: MSLPNSLFYT FFLILFSTIR IAQSIYLSPS PAPNPAYNDN DNIAPTVFDV TSFGAIGDCS TDDTSAFKMA WDAACMSTGP KSALLLVPYT FCFLVKPTTF
101: NGPCRTNLVL QIDGFIVSPD GPRSWPSNYQ RQWMMFYRVN GLSIQGSGVI NGRGQKWWNL PCKPHKGLNG TTQTGPCDSP VAIRLFQSSK VRIQGINFMN
201: SAQFHVRFDN CSDVVVDSVI IKAPASSPNT DGIHIENTHN VQIRNSMISN GDDCISIGAG CFNVDIKNVT CGPSHGISIG SLGVHNSQAY VSNITVTNST
301: IWNSDNGVRI KTWQGGSGSV SRIVFSNILM VNVRNPIMID QYYCQTNNCA NQTSAVIISD VLYANIKGTY DLRSPPIHFG CSDSVPCTNL TLTEVDLFPS
401: KGQHLENPFC WNAYGSMKIT VPPVYCLLDA PPDF

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.