Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 6
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000911.1-P | Field mustard | extracellular, vacuole | 79.23 | 76.13 |
| CDY71357 | Canola | extracellular, vacuole | 49.46 | 72.87 |
| AT1G02460.1 | Thale cress | extracellular | 69.38 | 65.99 |
| KRG96576 | Soybean | extracellular | 59.1 | 59.74 |
| KRH68311 | Soybean | extracellular | 58.67 | 59.31 |
| PGSC0003DMT400013344 | Potato | extracellular | 59.74 | 59.11 |
| Os01t0296200-00 | Rice | extracellular | 33.4 | 58.65 |
| Solyc01g079130.1.1 | Tomato | extracellular | 59.1 | 58.47 |
| VIT_07s0005g02090.t01 | Wine grape | extracellular | 57.82 | 58.06 |
| KRH69173 | Soybean | extracellular | 58.67 | 57.93 |
| KRH31755 | Soybean | extracellular | 58.67 | 57.68 |
| GSMUA_Achr11P... | Banana | extracellular | 51.82 | 55.5 |
| AT1G56710.1 | Thale cress | extracellular | 49.04 | 52.77 |
| HORVU1Hr1G067840.1 | Barley | extracellular, plastid | 52.03 | 51.05 |
| TraesCS1D01G311000.1 | Wheat | extracellular | 52.25 | 50.94 |
| TraesCS1A01G311100.1 | Wheat | extracellular | 52.46 | 50.62 |
| TraesCS1B01G322500.1 | Wheat | extracellular | 52.25 | 50.41 |
| GSMUA_Achr9P16670_001 | Banana | extracellular, plasma membrane | 53.96 | 50.3 |
| AT1G48100.1 | Thale cress | extracellular | 49.68 | 48.84 |
| Zm00001d040589_P001 | Maize | extracellular | 50.54 | 47.29 |
| EES00620 | Sorghum | extracellular | 50.11 | 46.25 |
| Zm00001d009057_P001 | Maize | extracellular | 41.76 | 46.1 |
| GSMUA_Achr3P08400_001 | Banana | extracellular | 55.03 | 45.73 |
| AT5G14650.1 | Thale cress | extracellular | 38.97 | 41.84 |
| AT1G80140.1 | Thale cress | extracellular | 27.62 | 38.39 |
| AT3G26610.1 | Thale cress | extracellular | 38.33 | 38.09 |
| AT1G80170.1 | Thale cress | extracellular | 35.12 | 36.94 |
| AT1G70500.1 | Thale cress | extracellular | 36.83 | 36.75 |
| AT2G41850.1 | Thale cress | extracellular | 34.05 | 36.72 |
| AT3G57510.1 | Thale cress | extracellular | 33.19 | 35.96 |
| AT1G23460.1 | Thale cress | extracellular | 35.33 | 35.87 |
| AT1G10640.1 | Thale cress | extracellular, golgi | 39.19 | 34.4 |
| AT1G60590.1 | Thale cress | extracellular | 38.97 | 33.7 |
| AT5G39910.1 | Thale cress | extracellular | 26.77 | 33.51 |
| AT5G44830.1 | Thale cress | extracellular | 23.34 | 32.83 |
| AT3G07970.1 | Thale cress | extracellular | 30.84 | 32.8 |
| AT3G15720.1 | Thale cress | extracellular | 31.91 | 32.68 |
| AT4G35670.1 | Thale cress | extracellular | 27.19 | 32.23 |
| AT5G44840.1 | Thale cress | extracellular | 26.98 | 32.23 |
| AT5G17200.1 | Thale cress | extracellular | 27.19 | 30.17 |
| AT4G32370.1 | Thale cress | extracellular | 21.84 | 29.82 |
| AT5G27530.1 | Thale cress | cytosol | 29.12 | 29.69 |
| AT4G32380.1 | Thale cress | extracellular | 25.7 | 26.49 |
| AT4G32375.1 | Thale cress | extracellular | 21.63 | 23.88 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:50.3.2 | EntrezGene:828220 | ProteinID:AEE82091.2 | ArrayExpress:AT4G01890 | EnsemblPlantsGene:AT4G01890 |
| RefSeq:AT4G01890 | TAIR:AT4G01890 | RefSeq:AT4G01890-TAIR-G | EnsemblPlants:AT4G01890.1 | TAIR:AT4G01890.1 | Unigene:At.34358 |
| UniProt:F4JG70 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005575 | GO:GO:0005576 |
| GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 |
| GO:GO:0016798 | GO:GO:0016829 | GO:GO:0071555 | InterPro:Glyco_hydro_28 | InterPro:IPR012334 | RefSeq:NP_001319841.1 |
| PFAM:PF00295 | PO:PO:0009005 | PANTHER:PTHR31375 | PANTHER:PTHR31375:SF43 | InterPro:PbH1 | InterPro:Pectin_lyas_fold |
| InterPro:Pectin_lyase_fold/virulence | SMART:SM00710 | SUPFAM:SSF51126 | UniParc:UPI000848CEBC | SEG:seg | : |
Description
Pectin lyase-like superfamily protein [Source:TAIR;Acc:AT4G01890]
Coordinates
chr4:+:816200..818468
Molecular Weight (calculated)
50680.0 Da
IEP (calculated)
7.901
GRAVY (calculated)
-0.189
Length
467 amino acids
Sequence
(BLAST)
(BLAST)
001: MLKLSRDPIL CITTLILIIT FSLLSYGTEA RLHHQASQPP SPSPNPNDPS KSPSRSQDLD HEVVYDVRKY GAVGNGVADD TVSFKTAWDS ACSNNKNNTA
101: SVLHVPYGFT FMIRSTIFTG PCRSYQYFQV DGTIVPRDGP KSWPSSLNKR QWLAFYRING MALQGAGVID GRGQNWWDLP CKPHQNVNKT KLAGPCESPA
201: ALRFFMSSNV IVKGLSIKNS PQVHLKLDGC HVVHINSLRI ISPPASPNTD GIHIENSNSV EIYNSVISNG DDCVSIGPGA YDIDIRNITC GPGGHGISIG
301: SLGEKNSHAC VSNVTVRDSF IKFSENGVRI KTWQGGSGSV SGVTFDNIHV DTVRNPIIID QYYCTTKSCA NKTSAVFVND IVYQSIKGTY DIRSPPMHFG
401: CSNNVPCTNL TLSNIELLPS KEDIVVGPFC WNAYGITDEF SVPLISCLKS NPSTSLLSGL SGRCGSP
101: SVLHVPYGFT FMIRSTIFTG PCRSYQYFQV DGTIVPRDGP KSWPSSLNKR QWLAFYRING MALQGAGVID GRGQNWWDLP CKPHQNVNKT KLAGPCESPA
201: ALRFFMSSNV IVKGLSIKNS PQVHLKLDGC HVVHINSLRI ISPPASPNTD GIHIENSNSV EIYNSVISNG DDCVSIGPGA YDIDIRNITC GPGGHGISIG
301: SLGEKNSHAC VSNVTVRDSF IKFSENGVRI KTWQGGSGSV SGVTFDNIHV DTVRNPIIID QYYCTTKSCA NKTSAVFVND IVYQSIKGTY DIRSPPMHFG
401: CSNNVPCTNL TLSNIELLPS KEDIVVGPFC WNAYGITDEF SVPLISCLKS NPSTSLLSGL SGRCGSP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.