Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 5
- extracellular 7
- vacuole 4
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47139 | Canola | extracellular | 83.55 | 83.73 |
| CDY11585 | Canola | extracellular | 83.55 | 83.73 |
| Bra016213.1-P | Field mustard | extracellular | 83.33 | 83.51 |
| AT1G23460.1 | Thale cress | extracellular | 73.5 | 74.78 |
| Solyc09g098270.2.1 | Tomato | cytosol | 58.76 | 63.51 |
| Solyc04g025440.2.1 | Tomato | extracellular | 62.18 | 63.26 |
| PGSC0003DMT400080722 | Potato | extracellular | 61.75 | 62.83 |
| PGSC0003DMT400055713 | Potato | extracellular | 59.62 | 60.92 |
| GSMUA_Achr7P01870_001 | Banana | cytosol | 54.7 | 58.18 |
| GSMUA_Achr4P22100_001 | Banana | extracellular | 54.27 | 54.74 |
| EES04449 | Sorghum | extracellular | 52.99 | 47.69 |
| Zm00001d015129_P001 | Maize | mitochondrion | 50.43 | 45.74 |
| Os02t0130200-01 | Rice | extracellular, golgi | 49.36 | 45.47 |
| TraesCS6B01G118000.2 | Wheat | extracellular, golgi, vacuole | 50.21 | 44.51 |
| TraesCSU01G113500.1 | Wheat | extracellular, golgi, vacuole | 50.21 | 44.51 |
| HORVU6Hr1G015390.2 | Barley | extracellular, golgi | 50.0 | 44.32 |
| TraesCS6A01G084500.1 | Wheat | extracellular, golgi, vacuole | 49.36 | 44.0 |
| AT1G80170.1 | Thale cress | extracellular | 38.68 | 40.77 |
| AT2G41850.1 | Thale cress | extracellular | 37.39 | 40.42 |
| AT1G80140.1 | Thale cress | extracellular | 28.21 | 39.29 |
| AT5G14650.1 | Thale cress | extracellular | 36.11 | 38.85 |
| AT1G56710.1 | Thale cress | extracellular | 35.9 | 38.71 |
| AT3G57510.1 | Thale cress | extracellular | 35.26 | 38.28 |
| AT3G07970.1 | Thale cress | extracellular | 35.9 | 38.27 |
| AT4G01890.1 | Thale cress | extracellular | 36.75 | 36.83 |
| AT4G35670.1 | Thale cress | extracellular | 30.77 | 36.55 |
| AT5G39910.1 | Thale cress | extracellular | 28.63 | 35.92 |
| AT1G02460.1 | Thale cress | extracellular | 37.39 | 35.64 |
| AT5G44830.1 | Thale cress | extracellular | 24.79 | 34.94 |
| AT3G26610.1 | Thale cress | extracellular | 34.62 | 34.47 |
| AT5G44840.1 | Thale cress | extracellular | 27.99 | 33.5 |
| AT1G48100.1 | Thale cress | extracellular | 33.97 | 33.47 |
| KRG99363 | Soybean | extracellular | 61.97 | 32.92 |
| AT3G15720.1 | Thale cress | extracellular | 32.05 | 32.89 |
| AT5G17200.1 | Thale cress | extracellular | 28.63 | 31.83 |
| AT5G27530.1 | Thale cress | cytosol | 30.98 | 31.66 |
| AT4G32370.1 | Thale cress | extracellular | 23.08 | 31.58 |
| AT1G10640.1 | Thale cress | extracellular, golgi | 35.26 | 31.02 |
| AT1G60590.1 | Thale cress | extracellular | 34.62 | 30.0 |
| AT4G32380.1 | Thale cress | extracellular | 26.71 | 27.59 |
| AT4G32375.1 | Thale cress | extracellular | 23.72 | 26.24 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:50.3.2 | EntrezGene:843386 | ProteinID:AAG52465.1 | ProteinID:AEE35071.1 | ArrayExpress:AT1G70500 |
| EnsemblPlantsGene:AT1G70500 | RefSeq:AT1G70500 | TAIR:AT1G70500 | RefSeq:AT1G70500-TAIR-G | EnsemblPlants:AT1G70500.1 | TAIR:AT1G70500.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005575 | GO:GO:0005576 |
| GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 |
| GO:GO:0016798 | GO:GO:0016829 | GO:GO:0071555 | InterPro:Glyco_hydro_28 | InterPro:IPR012334 | RefSeq:NP_177207.1 |
| PFAM:PF00295 | PO:PO:0000230 | PO:PO:0001185 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009009 |
| PO:PO:0009029 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020100 | ScanProsite:PS00502 | PANTHER:PTHR31375 |
| PANTHER:PTHR31375:SF29 | InterPro:PbH1 | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | UniProt:Q9CAL5 | SMART:SM00710 |
| SUPFAM:SSF51126 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0000048446 | SEG:seg | : |
Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9CAL5]
Coordinates
chr1:-:26566398..26568871
Molecular Weight (calculated)
50903.2 Da
IEP (calculated)
5.425
GRAVY (calculated)
-0.178
Length
468 amino acids
Sequence
(BLAST)
(BLAST)
001: MIKPFIISLF ALLMVASYGA TGKMLFKELD ILGKLENLDV PEDDIEDDVT FFDFSSFTSQ YSGKNLVNVD SFNASGDGVS DDTQAFIRAW TMACSAPNSV
101: LLVPQGRSYL VNATKFDGPC QEKLIIQIDG TIIAPDEPSQ WDPKFPRNWL QFSKLQGVVF QGNGVIDGSG TKWWAASCKK NKSNPCVGAP TALTIYSSSN
201: VYVRGLTIRN SQQMHLIIQR STTVRISRVM VTSPGDSPNT DGIHITASTD VVVQDSKIST GDDCVSIVNG SAKIKMKRIY CGPGHGISIG SLGQGHSKGT
301: VTAVVLETAF LKNTTNGLRI KTWQGGNGYV KGVRFENVVM QDVANPIIID QFYCDSPSTC QNQTSAVHIS EIMYRNITGT TKSSKAINFK CSDAVPCSHI
401: VLNNINLEGN DGKVEAYCNS AEGFGYGVVH PSADCLYSHD DKSLNQTDQY LAETIMVEKE TENAHDEL
101: LLVPQGRSYL VNATKFDGPC QEKLIIQIDG TIIAPDEPSQ WDPKFPRNWL QFSKLQGVVF QGNGVIDGSG TKWWAASCKK NKSNPCVGAP TALTIYSSSN
201: VYVRGLTIRN SQQMHLIIQR STTVRISRVM VTSPGDSPNT DGIHITASTD VVVQDSKIST GDDCVSIVNG SAKIKMKRIY CGPGHGISIG SLGQGHSKGT
301: VTAVVLETAF LKNTTNGLRI KTWQGGNGYV KGVRFENVVM QDVANPIIID QFYCDSPSTC QNQTSAVHIS EIMYRNITGT TKSSKAINFK CSDAVPCSHI
401: VLNNINLEGN DGKVEAYCNS AEGFGYGVVH PSADCLYSHD DKSLNQTDQY LAETIMVEKE TENAHDEL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.