Factsheet for Bra016213.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47139	Canola	extracellular	99.79	99.79
CDY11585	Canola	extracellular	98.72	98.72
AT1G70500.1	Thale cress	extracellular	83.51	83.33
Bra012375.1-P	Field mustard	cytosol	73.88	77.35
Bra024602.1-P	Field mustard	cytosol	71.95	76.02
Bra016345.1-P	Field mustard	extracellular	76.02	75.85
Solyc09g098270.2.1	Tomato	cytosol	61.24	66.05
PGSC0003DMT400055713	Potato	extracellular	61.88	63.1
Solyc04g025440.2.1	Tomato	extracellular	62.1	63.04
PGSC0003DMT400080722	Potato	extracellular	61.24	62.17
GSMUA_Achr7P01870_001	Banana	cytosol	55.46	58.86
GSMUA_Achr4P22100_001	Banana	extracellular	55.03	55.39
EES04449	Sorghum	extracellular	53.53	48.08
Zm00001d015129_P001	Maize	mitochondrion	50.96	46.12
Os02t0130200-01	Rice	extracellular, golgi	49.46	45.47
TraesCS6B01G118000.2	Wheat	extracellular, golgi, vacuole	50.75	44.89
TraesCS6A01G084500.1	Wheat	extracellular, golgi, vacuole	49.89	44.38
HORVU6Hr1G015390.2	Barley	extracellular, golgi	49.89	44.13
TraesCSU01G113500.1	Wheat	extracellular, golgi, vacuole	49.46	43.75
Bra003555.1-P	Field mustard	extracellular	41.54	43.4
Bra029690.1-P	Field mustard	cytosol	36.19	41.63
Bra016911.1-P	Field mustard	extracellular	38.33	41.34
Bra007332.1-P	Field mustard	extracellular	37.69	40.74
Bra003286.1-P	Field mustard	extracellular	37.47	40.42
Bra004655.1-P	Field mustard	extracellular	36.19	39.49
Bra001279.1-P	Field mustard	extracellular	36.62	39.13
Bra027926.1-P	Field mustard	extracellular	36.4	39.08
Bra016912.1-P	Field mustard	extracellular, nucleus, peroxisome	37.26	38.84
Bra008748.1-P	Field mustard	extracellular	36.4	38.72
Bra025631.1-P	Field mustard	extracellular	33.4	36.97
Bra032600.1-P	Field mustard	extracellular	38.33	36.46
Bra033328.1-P	Field mustard	extracellular	37.69	35.85
Bra000911.1-P	Field mustard	extracellular, vacuole	36.62	35.19
Bra008493.1-P	Field mustard	extracellular	29.34	35.13
Bra025099.1-P	Field mustard	extracellular	29.98	35.0
Bra018707.1-P	Field mustard	extracellular	35.12	34.75
Bra001605.1-P	Field mustard	extracellular	32.98	34.07
Bra025103.1-P	Field mustard	extracellular	28.91	33.75
Bra025216.1-P	Field mustard	extracellular	33.83	33.62
Bra011341.1-P	Field mustard	cytosol	27.62	32.82
Bra027211.1-P	Field mustard	extracellular	31.69	32.82
KRG99363	Soybean	extracellular	61.67	32.69
Bra027148.1-P	Field mustard	extracellular	36.83	32.09
Bra031724.1-P	Field mustard	extracellular	35.33	32.04
Bra027210.1-P	Field mustard	extracellular	31.26	32.02
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	35.97	31.52
Bra008572.1-P	Field mustard	extracellular	29.12	31.34
Bra023600.1-P	Field mustard	extracellular	28.69	31.31
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	35.33	31.07
Bra040077.1-P	Field mustard	extracellular	20.98	26.85

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EnsemblPlantsGene:Bra016213	EnsemblPlants:Bra016213.1	EnsemblPlants:Bra016213.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4DI86	PFAM:PF00295	ScanProsite:PS00502	PFscan:PS51257
PANTHER:PTHR31375	PANTHER:PTHR31375:SF29	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710
SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI0002541999	SEG:seg	:	:

Description

AT1G70500 (E=1e-225) | polygalacturonase, putative / pectinase, putative

Coordinates

chrA07:-:18842914..18844956

Molecular Weight (calculated)

50460.5 Da

IEP (calculated)

5.119

GRAVY (calculated)

-0.138

Length

467 amino acids

Sequence
(BLAST)

001: MDRLFIFSLL ALLMVTSCRA SGETAYRELD ILGELENLDV PQDDIDDDVT FFDFSLFTSQ FSGKNLVNVD SFGAAGDGVS DDTQAFVSAW KIACSAPRSV
101: LLVPQGRSYL VNATKFNGPC QENLIIQIDG TIVAPDDPSQ WNPRFQRVWL EFSKLQGVIF QGNGVIDGSG TKWWAASCKK NKSNPCIGAP TALTIESSSN
201: VYVRGLTIRN SQQMHLIIAR SNTVRVSRVM VTSPGDSPNT DGIHITASTN VIVQDCKIST GDDCVSIVNA SSRIKMKKIY CGPGHGISIG SLGRGNSTAT
301: VSAIVLDTAV LKNTTNGLRI KTWQGGNGYV KGVRFENVEM HDVANPIIID QFYCDSPSTC QNQTSAVHIT EIMYRNITGT TKSKNAIKFA CSDAVPCSHI
401: VLNNVNLEGN DGKVEAYCNS AEGFGYGVVH PSADCLDSHD NKGLDPTQYL SETVLVGEDA KNAHDEL

Best Arabidopsis Sequence Match ( AT1G70500.1 )
(BLAST)

001: MIKPFIISLF ALLMVASYGA TGKMLFKELD ILGKLENLDV PEDDIEDDVT FFDFSSFTSQ YSGKNLVNVD SFNASGDGVS DDTQAFIRAW TMACSAPNSV
101: LLVPQGRSYL VNATKFDGPC QEKLIIQIDG TIIAPDEPSQ WDPKFPRNWL QFSKLQGVVF QGNGVIDGSG TKWWAASCKK NKSNPCVGAP TALTIYSSSN
201: VYVRGLTIRN SQQMHLIIQR STTVRISRVM VTSPGDSPNT DGIHITASTD VVVQDSKIST GDDCVSIVNG SAKIKMKRIY CGPGHGISIG SLGQGHSKGT
301: VTAVVLETAF LKNTTNGLRI KTWQGGNGYV KGVRFENVVM QDVANPIIID QFYCDSPSTC QNQTSAVHIS EIMYRNITGT TKSSKAINFK CSDAVPCSHI
401: VLNNINLEGN DGKVEAYCNS AEGFGYGVVH PSADCLYSHD DKSLNQTDQY LAETIMVEKE TENAHDEL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9CAL5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.