Factsheet for Bra023600.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85471	Canola	extracellular	93.93	99.01
Bra008572.1-P	Field mustard	extracellular	74.53	73.5
AT5G17200.1	Thale cress	extracellular	70.79	71.97
Bra025099.1-P	Field mustard	extracellular	40.42	43.25
PGSC0003DMT400056828	Potato	extracellular	40.19	43.22
PGSC0003DMT400008955	Potato	extracellular	34.81	42.82
Bra025103.1-P	Field mustard	extracellular	39.25	42.0
Bra011341.1-P	Field mustard	cytosol	35.98	39.19
Bra004655.1-P	Field mustard	extracellular	38.08	38.08
Bra029690.1-P	Field mustard	cytosol	35.75	37.68
Bra025631.1-P	Field mustard	extracellular	37.15	37.68
Bra001605.1-P	Field mustard	extracellular	39.72	37.61
GSMUA_Achr11P...	Banana	extracellular	36.45	37.5
GSMUA_Achr9P22320_001	Banana	extracellular	35.98	37.29
Bra027210.1-P	Field mustard	extracellular	39.49	37.06
Bra007332.1-P	Field mustard	extracellular	37.38	37.04
TraesCS2B01G423400.1	Wheat	plastid	30.37	37.04
TraesCS2A01G405600.1	Wheat	extracellular	27.57	36.99
Bra016911.1-P	Field mustard	extracellular	37.38	36.95
TraesCS2D01G402300.1	Wheat	extracellular	28.74	36.94
TraesCS2B01G423300.1	Wheat	extracellular	34.58	36.91
TraesCS2A01G405300.1	Wheat	extracellular, nucleus	34.81	36.79
Bra003286.1-P	Field mustard	extracellular	37.15	36.72
Bra027211.1-P	Field mustard	extracellular	38.55	36.59
TraesCS2D01G402200.1	Wheat	extracellular	33.18	36.32
GSMUA_Achr4P13200_001	Banana	extracellular	35.51	36.02
KXG26899	Sorghum	extracellular	35.28	35.95
Bra001279.1-P	Field mustard	extracellular	36.68	35.93
HORVU2Hr1G096130.1	Barley	extracellular	33.88	35.8
TraesCS2D01G402100.1	Wheat	extracellular	33.88	35.8
Bra016912.1-P	Field mustard	extracellular, nucleus, peroxisome	36.92	35.27
TraesCS2A01G405100.1	Wheat	extracellular	34.11	35.01
Bra008493.1-P	Field mustard	extracellular	30.61	33.59
TraesCS2B01G423200.1	Wheat	extracellular	33.18	33.41
TraesCS2D01G402000.1	Wheat	extracellular	33.18	33.18
Bra040077.1-P	Field mustard	extracellular	28.27	33.15
Bra008748.1-P	Field mustard	extracellular	32.94	32.12
Bra003555.1-P	Field mustard	extracellular	33.41	31.99
Bra027926.1-P	Field mustard	extracellular	31.78	31.26
Zm00001d039668_P001	Maize	plastid	31.07	30.43
Bra024602.1-P	Field mustard	cytosol	30.84	29.86
Bra025216.1-P	Field mustard	extracellular	32.01	29.15
Bra012375.1-P	Field mustard	cytosol	29.91	28.7
Bra016213.1-P	Field mustard	extracellular	31.31	28.69
Bra018707.1-P	Field mustard	extracellular	31.54	28.6
Bra016345.1-P	Field mustard	extracellular	30.84	28.21
Bra032600.1-P	Field mustard	extracellular	31.31	27.29
Bra000911.1-P	Field mustard	extracellular, vacuole	30.84	27.16
Os01t0172900-00	Rice	nucleus	18.69	27.12
Bra033328.1-P	Field mustard	extracellular	30.84	26.88
Bra031724.1-P	Field mustard	extracellular	31.54	26.21
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	31.31	25.14
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	30.84	24.86
Bra027148.1-P	Field mustard	extracellular	29.91	23.88
GSMUA_Achr4P06370_001	Banana	extracellular	34.58	19.63

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EnsemblPlantsGene:Bra023600	EnsemblPlants:Bra023600.1	EnsemblPlants:Bra023600.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4E497	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375
PANTHER:PTHR31375:SF42	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126
SignalP:SignalP-noTM	UniParc:UPI00025430BB	SEG:seg	:	:	:

Description

AT5G17200 (E=2e-170) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Coordinates

chrA02:-:4144697..4146560

Molecular Weight (calculated)

46214.9 Da

IEP (calculated)

8.988

GRAVY (calculated)

-0.211

Length

428 amino acids

Sequence
(BLAST)

001: MNKSLLFFVF LCLLIQISKL GFCLERKAHN GNNGLKRHGF ISVTSFGAVG DGKADDTKAF LKAWKAVCKG GSRGKTNFVV PLGKTFMLKP LTFEGPCKSS
101: SITFLIRGNL VAPGYTWHAG NYPAWISFDS IYGLAITGGG TINGRGSVWW RNVQHRPTAM HFNNCNGLHI SNLHHLNSPR NHISLSCSEN ISLSGLNMTA
201: PGDSPNTDGI DISNCRGVDI RDSVIATGDD CIAINGGSSY INITGIFCGP GHGISVGSLG QNGHFSAVEE VRVKNCTLSN TKNGVRIKTF QNGLGFARKI
301: SFEDIKMVAS ENPIIIEQNY HDQGKNGDVS FEYSNHQSCH VNRLYQTESG SGNGRGVRVS DVRYSRIQGS SASSEAITMN CDANLGCVDI VMDHVNIVSA
401: KSGHKVSASC KNVHGKYFDS VISCQKKH

Best Arabidopsis Sequence Match ( AT5G17200.1 )
(BLAST)

001: MKSSLFFVLL CLFQINKLCF CLEEESLKVK NGFGSNGFIS VTSFGAIGDG KTDDTKAFLK AWEAVCKGGH NRKILVPQGK TFMLKPLTFI GPCKSSTISL
101: SIRGNLVAPG YTWYAGRYTT WISFDSINGL VVTGGGTIDG RGSLWWGNVN NRPCAMHFNN CNGLRISNLR HLNSPRNHVG LSCSQNIEVR GLRMTAPGDS
201: PNTDGIDISN CIGVHIHDSV IATGDDCIAI NSGSSHINIT GIFCGPGHGI SVGSLGVTGD FETVEEVRVK NCTFTKTQNG VRIKTYQNGS GYARKISFED
301: INMVASENPI IIDQTYHNGG TNGGISKSSS SYQNCHLTAK QRTPSGNGKG VKVTDVRYAR IRGSSASDQD ITLNCDADLG CSDIVMDNVN MVSATFGHKL
401: FSSCKNAHGS LFASKVDCLK H

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FFI9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.