Factsheet for TraesCS2B01G423300.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G405300.1	Wheat	extracellular, nucleus	93.27	92.35
TraesCS2D01G402100.1	Wheat	extracellular	92.52	91.6
TraesCS2B01G423400.1	Wheat	plastid	74.56	85.19
HORVU2Hr1G096130.1	Barley	extracellular	82.54	81.73
TraesCS2B01G423200.1	Wheat	extracellular	77.31	72.94
KXG26899	Sorghum	extracellular	60.35	57.62
GSMUA_Achr11P...	Banana	extracellular	43.14	41.59
KRH14715	Soybean	cytosol, extracellular, nucleus, plastid	35.91	41.5
TraesCS5B01G468700.1	Wheat	extracellular	42.14	41.22
CDY50769	Canola	extracellular	34.91	40.94
TraesCS5B01G469000.1	Wheat	extracellular	41.4	40.89
KRH23786	Soybean	cytosol, extracellular, nucleus, plastid	36.66	40.83
TraesCS1B01G083700.1	Wheat	extracellular	30.67	40.73
AT4G35670.1	Thale cress	extracellular	39.65	40.36
CDX73440	Canola	extracellular	40.15	40.25
CDY69377	Canola	extracellular	39.9	40.0
KRH66273	Soybean	extracellular	30.67	39.68
CDY39404	Canola	extracellular	39.4	39.6
Bra025099.1-P	Field mustard	extracellular	39.4	39.5
Bra025103.1-P	Field mustard	extracellular	39.4	39.5
AT5G44830.1	Thale cress	extracellular	32.67	39.46
KRH66276	Soybean	extracellular	34.91	39.44
CDY39399	Canola	extracellular	39.15	39.25
KRG88958	Soybean	extracellular	34.66	39.15
VIT_09s0002g06610.t01	Wine grape	extracellular	37.91	39.07
VIT_09s0002g06650.t01	Wine grape	extracellular	39.15	38.86
VIT_09s0096g00850.t01	Wine grape	cytoskeleton, cytosol, peroxisome	35.91	38.81
AT5G44840.1	Thale cress	extracellular	37.66	38.62
TraesCS7B01G067800.1	Wheat	extracellular	40.4	38.57
TraesCS3B01G148500.1	Wheat	extracellular	38.15	38.15
TraesCS5B01G468900.1	Wheat	extracellular	39.65	37.95
KRH48978	Soybean	extracellular	28.18	37.92
TraesCS3B01G148600.1	Wheat	extracellular	38.9	37.86
CDY47032	Canola	extracellular	37.91	37.72
Solyc08g060970.2.1	Tomato	nucleus	37.16	37.53
CDX72553	Canola	extracellular	37.66	37.47
PGSC0003DMT400008955	Potato	extracellular	32.42	37.36
PGSC0003DMT400056828	Potato	extracellular	36.91	37.19
KRH05150	Soybean	extracellular	24.94	37.17
TraesCS1B01G142700.1	Wheat	plastid	40.65	37.05
TraesCS4B01G244300.1	Wheat	extracellular	39.9	36.95
KRH23567	Soybean	extracellular	36.91	36.91
VIT_09s0002g06580.t01	Wine grape	cytosol	35.66	36.57
CDX85471	Canola	extracellular	36.66	36.21
TraesCS1B01G382200.2	Wheat	extracellular	37.16	35.99
Solyc03g116580.2.1	Tomato	extracellular	38.65	35.47
KRH09740	Soybean	extracellular	37.16	35.06
Bra001605.1-P	Field mustard	extracellular	39.4	34.96
CDX75843	Canola	extracellular	39.4	34.88
CDY02729	Canola	extracellular	37.16	34.81
CDY30105	Canola	extracellular	38.9	34.74
Bra023600.1-P	Field mustard	extracellular	36.91	34.58
Bra008572.1-P	Field mustard	extracellular	37.41	34.56
CDY16952	Canola	extracellular	37.41	34.56
CDY58462	Canola	extracellular	38.9	34.44
Bra027211.1-P	Field mustard	extracellular	38.65	34.37
KRH66305	Soybean	extracellular	32.92	34.29
AT5G17200.1	Thale cress	extracellular	35.66	33.97
CDX69397	Canola	extracellular	34.16	33.91
CDX97703	Canola	extracellular	38.15	33.85
AT3G15720.1	Thale cress	extracellular	38.4	33.77
CDY30107	Canola	extracellular	37.91	33.33
CDX97704	Canola	extracellular	37.91	33.33
Bra027210.1-P	Field mustard	extracellular	37.66	33.11
Bra011341.1-P	Field mustard	cytosol	31.92	32.57
TraesCS1B01G382700.1	Wheat	extracellular	33.92	32.46
TraesCS1B01G382800.1	Wheat	extracellular	34.41	31.8
CDX68839	Canola	cytosol	32.17	31.77
CDX75239	Canola	cytosol	31.92	31.53
AT5G27530.1	Thale cress	cytosol	35.66	31.22
TraesCS3B01G020300.1	Wheat	extracellular	33.92	30.7
TraesCS6B01G118000.2	Wheat	extracellular, golgi, vacuole	40.15	30.49
AT4G32370.1	Thale cress	extracellular	25.94	30.41
TraesCS1B01G322500.1	Wheat	extracellular	36.41	30.17
TraesCS7B01G230600.1	Wheat	extracellular	34.66	28.54
CDY39884	Canola	extracellular	31.67	28.54
TraesCS1B01G448100.1	Wheat	extracellular	37.41	28.3
TraesCS3B01G258600.2	Wheat	extracellular	37.16	27.75
Bra040077.1-P	Field mustard	extracellular	25.19	27.67
AT4G32380.1	Thale cress	extracellular	31.17	27.59
AT4G32375.1	Thale cress	extracellular	23.94	22.7

Protein Annotations

EnsemblPlants:TraesCS2B01G423300.1	EnsemblPlantsGene:TraesCS2B01G423300	Gene3D:2.160.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31375	PANTHER:PTHR31375:SF45	PFAM:PF00295
ScanProsite:PS00502	SignalP:SignalP-noTM	SMART:SM00710	SUPFAM:SSF51126	MapMan:50.3.2	:

Description

No Description!

Coordinates

chr2B:+:608666841..608669385

Molecular Weight (calculated)

42549.5 Da

IEP (calculated)

8.892

GRAVY (calculated)

-0.095

Length

401 amino acids

Sequence
(BLAST)

001: MGIIRTAILF LAALAWCSVL AAGGEVDGVF NVNDYGARGD GVTDDTKAFV HAWTAACGAR GSSASTLLVP AAKSFLVGPT RFNGPCASTR ITVQVMGTIT
101: APPAGAWSGK NYWLMFYKVH GLTVTGDSTG LLDGRGGTWW RNKCKGYADC ISKAPTALVV MSCADVELRQ FRSKDSPQMH IAVSQSSKVQ LTQLTITAPG
201: DSPNTDGVHI DRSEDVRVSR STISTGDDCV SISSRSRFVT VDGIVCGPGH GISVGSLGKN GATASVEYID VKNVHFINTT NGARIKTWKG RKGYAKSISF
301: TDIKFTNVDN PVVINQFYVD RHHVPNMGAV ALSNITYKNL KGTSKHQTAV DFNCSESGSC TKIHVNSVEI TAADGGGTMA RCQNAQGDTS GYVYPKIPCL
401: R

Best Arabidopsis Sequence Match ( AT4G35670.1 )
(BLAST)

001: MKTILDISIL INFLCFGIVY GKNYNVLNFD AKGDGQTDDS EAFLQAWTAA CGGDGDIKTL LIPSGKTFLL QPTVFQGPCK SSSIKVQLDG TIVAPSDKFA
101: WSDPISRMWI KFSTVSGLII VGSGTIDSRG SSFWELNLKA SQRPTALHIS KCDNLRINGI TSIDSPKNHI SIKTCNTVAI SNINLFAPET SPNTDGIDIS
201: DSTNINIFDS TIQTGDDCIA INSGSSNINI TGINCGPGHG ISVGSLGAGG AEAKVSDVQV THCTFNQTTN GARIKTWLGG QGYARNISFT DITLVNTKNP
301: IIIDQHYIDK GRLTEESAVA ISNVKFVDFR GTSSNKNAIT LKCSETTHCV DVVMDGIDIT MANGGKPKVN CQYVDGESSD TDLMRDCFKN NTSS

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JN47]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.