Factsheet for TraesCS1B01G142700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
extracellular 3
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	extracellular, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	extracellular
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G124300.1	Wheat	extracellular, plastid	95.91	97.46
TraesCS1D01G129600.2	Wheat	cytosol, extracellular, nucleus	69.55	94.44
TraesCS7B01G067800.1	Wheat	extracellular	87.27	91.43
TraesCS5B01G468900.1	Wheat	extracellular	58.86	61.81
TraesCS5B01G468700.1	Wheat	extracellular	56.82	60.98
TraesCS5B01G469000.1	Wheat	extracellular	54.55	59.11
TraesCS1B01G083700.1	Wheat	extracellular	40.0	58.28
TraesCS4B01G244300.1	Wheat	extracellular	42.05	42.73
TraesCS2B01G423400.1	Wheat	plastid	32.73	41.03
TraesCS1B01G382200.2	Wheat	extracellular	38.41	40.82
TraesCS2B01G423300.1	Wheat	extracellular	37.05	40.65
TraesCS3B01G148600.1	Wheat	extracellular	35.91	38.35
TraesCS2B01G423200.1	Wheat	extracellular	36.82	38.12
TraesCS3B01G148500.1	Wheat	extracellular	34.32	37.66
TraesCS1B01G382700.1	Wheat	extracellular	32.95	34.61
TraesCS6B01G118000.2	Wheat	extracellular, golgi, vacuole	40.23	33.52
TraesCS1B01G322500.1	Wheat	extracellular	36.82	33.47
TraesCS7B01G230600.1	Wheat	extracellular	36.14	32.65
TraesCS1B01G382800.1	Wheat	extracellular	31.82	32.26
TraesCS3B01G020300.1	Wheat	extracellular	32.05	31.83
TraesCS3B01G258600.2	Wheat	extracellular	36.14	29.61
TraesCS1B01G448100.1	Wheat	extracellular	35.45	29.43

Protein Annotations

EnsemblPlants:TraesCS1B01G142700.1	EnsemblPlantsGene:TraesCS1B01G142700	Gene3D:2.160.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31375	PANTHER:PTHR31375:SF39	PFAM:PF00295
ScanProsite:PS00502	SEG:seg	SMART:SM00710	SUPFAM:SSF51126	MapMan:21.3.5.1.1	:

Description

No Description!

Coordinates

chr1B:-:192274317..192276238

Molecular Weight (calculated)

48018.1 Da

IEP (calculated)

9.754

GRAVY (calculated)

-0.235

Length

440 amino acids

Sequence
(BLAST)

001: MMEYLIPSVS APPAHTKSAQ MASIVPLFSL LSLFLCCVLA KKDMKVAPLT NWSDHRDRSL QSNHVFSVLR YGAYGDGRHD DTKALSKAWA AACSSLNPST
101: VLIPKGKKCL TKHVTFSGPC KSSIKLMIEG TLVAPPKRSY WIEDTIRHWI LFRSVRGLTV TGGGTIDGNG KIWWQNSCKV NTKLPCRQAP TALTFYSCTN
201: LKVNNLEVLN SQQIHISMER CSDVRMSRLS IRAPGTSPNT DGIHIAHSKD VKVMDCAIKT GDDCMSIEDG TENLHVKNIV CGPGHGISIG SLGDRNSQAQ
301: VANITIDGVR LHDTTNGARI KTWQGGRGYA KNIVFKNMIM DNVQNPIIID QNYCDSATPC NKQKAAVEVS NVLFKNIRGT SASREAIKLS CSKAVPCHGI
401: ALHNVKLTLK RGGGDAKSTC QNAKWRKLGT VMPQPCSLND

Best Arabidopsis Sequence Match ( AT3G57510.1 )
(BLAST)

001: MARCCRHLAV FLCVLLMLSL CKALSSNVDD GYGHEDGSFE SDSLLKLNND DVLSLISSDE TTLEASTVSV SNFGAKGDGK TDDTQAFKKA WKKACSTNGV
101: TTFLVPKGKT YLLKSTRFRG PCKSLRNFQI LGTLSASTKR SDYKDKNHWL ILEDVNNLSI DGGSTGIING NGKTWWQNSC KIDKSKPCTK APTALTLYNL
201: KNLNVKNLRV KNAQQIQISI EKCNKVEVSN VEITAPGDSP NTDGIHITNT QNIRVSNSDI GTGDDCISIE DGTQNLQIFD LTCGPGHGIS IGSLGDDNSK
301: AYVSGINVDG AKFSESDNGV RIKTYQGGSG TAKNIKFQNI RMENVKNPII IDQDYCDKDK CEDQESAVQV KNVVYKNISG TSATDVAITL NCSEKYPCQG
401: IVLENVKIKG GTASCKNANV KNQGTVSPKC S

Arabidopsis Description

ADPG1Polygalacturonase ADPG1 [Source:UniProtKB/Swiss-Prot;Acc:O23147]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.