Factsheet for TraesCS6B01G118000.2

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular, vacuole

Predictor Summary:

extracellular 4
endoplasmic reticulum 3
vacuole 4
plasma membrane 3
golgi 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi, vacuole
Any Predictor:	mitochondrion, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G113500.1	Wheat	extracellular, golgi, vacuole	93.75	93.75
TraesCS6A01G084500.1	Wheat	extracellular, golgi, vacuole	91.86	92.38
HORVU6Hr1G015390.2	Barley	extracellular, golgi	91.1	91.1
Os02t0130200-01	Rice	extracellular, golgi	61.74	64.17
Zm00001d015129_P001	Maize	mitochondrion	60.98	62.4
EES04449	Sorghum	extracellular	60.04	60.96
GSMUA_Achr7P01870_001	Banana	cytosol	44.89	53.86
CDY04708	Canola	plastid	28.03	53.43
GSMUA_Achr4P22100_001	Banana	extracellular	46.78	53.23
Bra024602.1-P	Field mustard	cytosol	43.18	51.58
Bra012375.1-P	Field mustard	cytosol	43.56	51.57
CDY11585	Canola	extracellular	45.45	51.39
CDY25786	Canola	cytosol	43.37	51.35
CDY54292	Canola	cytosol	43.37	51.35
PGSC0003DMT400080722	Potato	extracellular	44.32	50.87
Solyc04g025440.2.1	Tomato	extracellular	44.32	50.87
CDY47139	Canola	extracellular	44.89	50.75
Bra016213.1-P	Field mustard	extracellular	44.89	50.75
AT1G23460.1	Thale cress	extracellular	44.13	50.65
Solyc09g098270.2.1	Tomato	cytosol	41.29	50.35
AT1G70500.1	Thale cress	extracellular	44.51	50.21
Bra016345.1-P	Field mustard	extracellular	44.32	50.0
PGSC0003DMT400055713	Potato	extracellular	42.8	49.34
CDY44150	Canola	extracellular, golgi, plastid	44.7	47.01
TraesCS1B01G382200.2	Wheat	extracellular	34.28	43.72
TraesCS5B01G468700.1	Wheat	extracellular	33.33	42.93
TraesCS5B01G469000.1	Wheat	extracellular	32.95	42.86
CDY41445	Canola	endoplasmic reticulum	44.51	42.27
TraesCS7B01G067800.1	Wheat	extracellular	33.52	42.14
TraesCS1B01G083700.1	Wheat	extracellular	24.05	42.05
TraesCS2B01G423400.1	Wheat	plastid	27.27	41.03
TraesCS1B01G142700.1	Wheat	plastid	33.52	40.23
TraesCS2B01G423300.1	Wheat	extracellular	30.49	40.15
TraesCS5B01G468900.1	Wheat	extracellular	31.82	40.1
TraesCS1B01G382700.1	Wheat	extracellular	30.49	38.42
TraesCS2B01G423200.1	Wheat	extracellular	30.87	38.35
TraesCS4B01G244300.1	Wheat	extracellular	31.44	38.34
TraesCS1B01G382800.1	Wheat	extracellular	29.73	36.18
TraesCS3B01G148600.1	Wheat	extracellular	28.03	35.92
TraesCS1B01G322500.1	Wheat	extracellular	32.77	35.74
TraesCS3B01G020300.1	Wheat	extracellular	29.73	35.44
TraesCS3B01G148500.1	Wheat	extracellular	26.7	35.16
TraesCS7B01G230600.1	Wheat	extracellular	30.49	33.06
TraesCS3B01G258600.2	Wheat	extracellular	31.44	30.91
TraesCS1B01G448100.1	Wheat	extracellular	29.73	29.62
KRG99363	Soybean	extracellular	46.4	27.81

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334	PFAM:PF00295
ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF29	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence
SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6B01G118000	EnsemblPlants:TraesCS6B01G118000.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6B:-:112897909..112903050

Molecular Weight (calculated)

55904.4 Da

IEP (calculated)

5.772

GRAVY (calculated)

-0.211

Length

528 amino acids

Sequence
(BLAST)

001: MGRGRRRGMR AVPLFLVLLV LVFMAVARVA AAEGSDVAEG VDVGGGEGED KAFEKRFLKL WTDGGGGDGE DHLRCYGDDE DDYGDIYDDE KVKEMTEEEE
101: EGEDGIMLGA TRCPNPNKKK KKKKRNVVKV DSFGAVGDGC ADDTEAFAKA WEKACSLKDA VLVVTAGRRY KVGPSRFMGP CKERLVVLIH GTIVAPEEPS
201: EWNPKSPRLW LLFGGLVGAR IQGGGVIDGS GSKWWANSCK VDRSKPCKGA PTAVTIDSCR GVRVRGLTIQ NAQQMHLTVS RSRGVRLDGM AIQAPGDSPN
301: TDGIHVAEST AVTITGARIG TGDDCVSISN ASFAVKMKGI VCDPGHGISI GSLGQGGSFA AVEGVTLDDA RIARAQNGVR IKTWQGGAGY VRNVRFSNVL
401: VEAVDHPIII DQFYCDSRTP CANQTTNVAV SNVMYRNISG TSTRDEAIKF ACSDAVPCSD IVLSNVNLLG DDGAEVQAVC NCAMGLGYDP VRPAVDCLRN
501: NACGSGGGGL KLGAEEPSTT VAPLHTEL

Best Arabidopsis Sequence Match ( AT1G70500.1 )
(BLAST)

001: MIKPFIISLF ALLMVASYGA TGKMLFKELD ILGKLENLDV PEDDIEDDVT FFDFSSFTSQ YSGKNLVNVD SFNASGDGVS DDTQAFIRAW TMACSAPNSV
101: LLVPQGRSYL VNATKFDGPC QEKLIIQIDG TIIAPDEPSQ WDPKFPRNWL QFSKLQGVVF QGNGVIDGSG TKWWAASCKK NKSNPCVGAP TALTIYSSSN
201: VYVRGLTIRN SQQMHLIIQR STTVRISRVM VTSPGDSPNT DGIHITASTD VVVQDSKIST GDDCVSIVNG SAKIKMKRIY CGPGHGISIG SLGQGHSKGT
301: VTAVVLETAF LKNTTNGLRI KTWQGGNGYV KGVRFENVVM QDVANPIIID QFYCDSPSTC QNQTSAVHIS EIMYRNITGT TKSSKAINFK CSDAVPCSHI
401: VLNNINLEGN DGKVEAYCNS AEGFGYGVVH PSADCLYSHD DKSLNQTDQY LAETIMVEKE TENAHDEL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9CAL5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.