Factsheet for TraesCS5B01G468900.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G459100.1	Wheat	extracellular	93.56	94.23
TraesCS5D01G470200.1	Wheat	extracellular	94.03	94.03
HORVU5Hr1G109970.1	Barley	extracellular	86.4	87.23
TraesCS5B01G468700.1	Wheat	extracellular	74.94	76.59
TraesCS5B01G469000.1	Wheat	extracellular	73.03	75.37
EER90686	Sorghum	plastid	66.59	63.99
Zm00001d034552_P001	Maize	extracellular	66.35	63.04
Zm00001d034551_P001	Maize	extracellular	65.16	62.61
TraesCS7B01G067800.1	Wheat	extracellular	62.05	61.9
EER93240	Sorghum	extracellular	65.16	60.4
EER90681	Sorghum	extracellular	67.06	60.17
TraesCS1B01G142700.1	Wheat	plastid	61.81	58.86
Os03t0808000-00	Rice	extracellular	64.44	58.44
Zm00001d034559_P001	Maize	extracellular	64.68	57.05
Zm00001d013032_P001	Maize	extracellular	64.44	55.44
TraesCS1B01G083700.1	Wheat	extracellular	39.62	54.97
TraesCS4B01G244300.1	Wheat	extracellular	44.15	42.73
TraesCS1B01G382200.2	Wheat	extracellular	40.1	40.58
TraesCS2B01G423400.1	Wheat	plastid	33.65	40.17
TraesCS2B01G423300.1	Wheat	extracellular	37.95	39.65
TraesCS3B01G148500.1	Wheat	extracellular	35.32	36.91
TraesCS2B01G423200.1	Wheat	extracellular	36.99	36.47
TraesCS1B01G382700.1	Wheat	extracellular	35.8	35.8
TraesCS3B01G148600.1	Wheat	extracellular	34.84	35.44
TraesCS7B01G230600.1	Wheat	extracellular	38.42	33.06
TraesCS1B01G382800.1	Wheat	extracellular	33.17	32.03
TraesCS6B01G118000.2	Wheat	extracellular, golgi, vacuole	40.1	31.82
TraesCS3B01G020300.1	Wheat	extracellular	33.41	31.6
TraesCS1B01G322500.1	Wheat	extracellular	36.04	31.2
TraesCS1B01G448100.1	Wheat	extracellular	38.66	30.57
TraesCS3B01G258600.2	Wheat	extracellular	38.19	29.8

Protein Annotations

Gene3D:2.160.20.10	MapMan:21.3.5.1.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334	PFAM:PF00295
ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF98	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence
SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS5B01G468900	EnsemblPlants:TraesCS5B01G468900.1	SEG:seg

Description

No Description!

Coordinates

chr5B:+:642281802..642283061

Molecular Weight (calculated)

45112.2 Da

IEP (calculated)

9.356

GRAVY (calculated)

-0.203

Length

419 amino acids

Sequence
(BLAST)

001: MASTTTRLVC APLLMLLLLS VSTANSVQDT GSSLRSSTQK NVFILDNYGA RGDGKHDDTQ ALAKAWSAAC SSSRPAVLLV PKGKTYLLNS ITLSGPCRSS
101: IVFKVKGTLI APPSMSAWSE NDRRRWIFLQ RITGLTVNGG GTINGNGEIW WKNSCKTNKA LPCKGAPTAL TFHLCTNLKV ENLKLVNSQQ IHVSVQDCSN
201: VHLARLSITA PGTSPNTDGI HITHSKYVQV RDCLVKTGDD CISIENGTHN LHVTKVICGP GHGISIGSLG DGNSRAEVSH IYIDTVRLYG TTNGARIKTW
301: QGGSGYAKDI VFQNMIMDNV QNPIIIDQNY CDSAKPCRSQ NSAVEVRDVA FKNIRGTTIS KDAIKLSCSK DLPCSGIALE NIDLKLEGGK GDTESTCQNA
401: KWRKSGNVIP LPCKGKIKL

Best Arabidopsis Sequence Match ( AT1G70500.1 )
(BLAST)

001: MIKPFIISLF ALLMVASYGA TGKMLFKELD ILGKLENLDV PEDDIEDDVT FFDFSSFTSQ YSGKNLVNVD SFNASGDGVS DDTQAFIRAW TMACSAPNSV
101: LLVPQGRSYL VNATKFDGPC QEKLIIQIDG TIIAPDEPSQ WDPKFPRNWL QFSKLQGVVF QGNGVIDGSG TKWWAASCKK NKSNPCVGAP TALTIYSSSN
201: VYVRGLTIRN SQQMHLIIQR STTVRISRVM VTSPGDSPNT DGIHITASTD VVVQDSKIST GDDCVSIVNG SAKIKMKRIY CGPGHGISIG SLGQGHSKGT
301: VTAVVLETAF LKNTTNGLRI KTWQGGNGYV KGVRFENVVM QDVANPIIID QFYCDSPSTC QNQTSAVHIS EIMYRNITGT TKSSKAINFK CSDAVPCSHI
401: VLNNINLEGN DGKVEAYCNS AEGFGYGVVH PSADCLYSHD DKSLNQTDQY LAETIMVEKE TENAHDEL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9CAL5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.