Factsheet for Zm00001d013032_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
extracellular 6
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93240	Sorghum	extracellular	68.79	74.11
Zm00001d034552_P001	Maize	extracellular	63.04	69.61
Zm00001d034551_P001	Maize	extracellular	62.01	69.27
Zm00001d034559_P001	Maize	extracellular	65.71	67.37
TraesCS5B01G468700.1	Wheat	extracellular	55.85	66.34
TraesCS5B01G469000.1	Wheat	extracellular	55.24	66.26
TraesCS5D01G470100.1	Wheat	extracellular	55.44	65.85
TraesCS5A01G459000.1	Wheat	extracellular	54.83	65.28
TraesCS5A01G459100.1	Wheat	extracellular	55.24	64.66
TraesCS5B01G468900.1	Wheat	extracellular	55.44	64.44
TraesCS5D01G470200.1	Wheat	extracellular	55.44	64.44
HORVU5Hr1G109970.1	Barley	extracellular	54.21	63.61
HORVU5Hr1G109980.2	Barley	extracellular, plastid	54.62	59.24
Os03t0808000-00	Rice	extracellular	55.65	58.66
Zm00001d038874_P002	Maize	extracellular	34.91	41.26
Zm00001d048079_P001	Maize	extracellular	37.99	40.04
Zm00001d039668_P001	Maize	plastid	31.01	34.55
Zm00001d015129_P001	Maize	mitochondrion	36.55	34.5
Zm00001d009057_P001	Maize	extracellular	28.95	33.33
Zm00001d040589_P001	Maize	extracellular	33.68	32.87
Zm00001d011156_P001	Maize	plastid	28.95	32.34
Zm00001d040725_P002	Maize	extracellular, vacuole	32.65	31.67
Zm00001d045974_P001	Maize	extracellular	27.1	31.5
Zm00001d038875_P001	Maize	extracellular	29.77	30.79
Zm00001d009667_P001	Maize	extracellular, mitochondrion, plastid	30.8	29.07
Zm00001d044110_P001	Maize	extracellular	31.21	28.04
Zm00001d011444_P002	Maize	extracellular	30.8	27.73
Zm00001d009167_P001	Maize	extracellular	32.44	20.63

Protein Annotations

EntrezGene:100274254	Gene3D:2.160.20.10	MapMan:50.3.2	ProteinID:AQK62187.1	UniProt:B4FZT4	EMBL:BT042622
GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	PFAM:PF00295
PANTHER:PTHR31375	PANTHER:PTHR31375:SF98	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710
SUPFAM:SSF51126	SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI00017B8303	EnsemblPlantsGene:Zm00001d013032	EnsemblPlants:Zm00001d013032_P001
EnsemblPlants:Zm00001d013032_T001	SEG:seg	:	:	:	:

Description

Polygalacturonase QRT2

Coordinates

chr5:+:3489366..3491526

Molecular Weight (calculated)

51325.7 Da

IEP (calculated)

7.135

GRAVY (calculated)

-0.108

Length

487 amino acids

Sequence
(BLAST)

001: MHSSLLLLLA MPTTMVVAAA AARTDKPRLM WLPPLVVALL LLSGALLEAA AAAAGTSTTS ADDAASSTSS LAAERAATGR RSRLLVASQS TFFSLDSYGA
101: RGDGRHDDTQ ALARAWEAAC FSPRPAVLLV PGGKRYLLKL VALSGPCKSS VTVTVEGTLV ASRDRSDWIG GGGGTDRRRH WIVFRQVDGL TVGGGGAVDG
201: SGETWWKHSC KINKDLPCEE APTALSFHYC TSLRVHDLKI VDSQQIHVSI EDCTGVQLTG LSITAPGTSP NTDGIHITRS RDVQVTNCKI KTGDDCLSIE
301: AGTHDLHVSQ IVCGPGHGIS IGSLGDDNSR AEVSGITIDT VQLYGTTNGA RIKTYQGGSG YARDITFQNM AMHGVENPIV IDQDYCDKRQ ATSPPCEAQG
401: SSSSSAVEVS DVAFRNIRGT TVSKDAIKLS CSWNVPCHGI TLQNISLEML GGKGTAESTC RNARWRTSGT VLPQPCTSFI DLGHGSN

Best Arabidopsis Sequence Match ( AT2G41850.1 )
(BLAST)

001: MARCTNLVTV FLLWALLMFS WCKASRISPN VYDHSYKRFK SDSLIKRRED ITGLRSFVRA SLRTPTTVSV SDFGAKGDGK TDDTQAFVNA WKKACSSNGA
101: VNLLVPKGNT YLLKSIQLTG PCNSILTVQI FGTLSASQKR SDYKDISKWI MFDGVNNLSV DGGDTGVVDG NGETWWQNSC KRNKAKPCTK APTALTFYNS
201: KSLIVKNLKV RNAQQIQISI EKCSNVQVSN VVVTAPADSP NTDGIHITNT QNIRVSESII GTGDDCISIE SGSQNVQIND ITCGPGHGIS IGSLGDDNSK
301: AFVSGVTVDG AKLSGTDNGV RIKTYQGGSG TASNIIFQNI QMDNVKNPII IDQDYCDKSK CTTEKSAVQV KNVVYRDISG TSASENAITF NCSKNYPCQG
401: IVLDRVNIKG GKATCTNANV VDKGAVLPQC NST

Arabidopsis Description

ADPG2Polygalacturonase ADPG2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RY29]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.