Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG22449 | Sorghum | extracellular, golgi | 78.56 | 79.06 |
| HORVU1Hr1G079130.2 | Barley | extracellular | 57.54 | 62.44 |
| TraesCS1B01G382800.1 | Wheat | extracellular | 55.84 | 60.6 |
| TraesCS1A01G365300.1 | Wheat | extracellular | 55.63 | 60.23 |
| Os05t0542900-01 | Rice | extracellular | 56.69 | 60.0 |
| TraesCS1D01G370800.1 | Wheat | extracellular | 55.2 | 59.91 |
| TraesCS3A01G024500.1 | Wheat | extracellular | 53.93 | 57.47 |
| TraesCS3B01G020300.1 | Wheat | extracellular | 52.87 | 56.21 |
| TraesCS3D01G021700.1 | Wheat | extracellular | 52.02 | 55.56 |
| HORVU3Hr1G006180.2 | Barley | extracellular | 50.32 | 55.12 |
| Zm00001d038874_P002 | Maize | extracellular | 45.65 | 52.18 |
| KRH09752 | Soybean | extracellular | 38.0 | 39.08 |
| VIT_09s0002g06380.t01 | Wine grape | cytosol | 33.76 | 38.41 |
| PGSC0003DMT400001638 | Potato | extracellular, plastid | 36.52 | 38.31 |
| Solyc03g116500.2.1 | Tomato | nucleus | 36.73 | 38.27 |
| Solyc06g068040.2.1 | Tomato | nucleus | 34.61 | 37.3 |
| CDY54312 | Canola | extracellular | 35.03 | 37.16 |
| GSMUA_Achr3P13670_001 | Banana | extracellular | 35.67 | 36.92 |
| CDY57689 | Canola | extracellular | 35.03 | 36.91 |
| Bra003555.1-P | Field mustard | extracellular | 34.82 | 36.69 |
| AT1G80170.1 | Thale cress | extracellular | 34.39 | 36.49 |
| Zm00001d034552_P001 | Maize | extracellular | 31.0 | 33.11 |
| Zm00001d034551_P001 | Maize | extracellular | 29.94 | 32.34 |
| Zm00001d015129_P001 | Maize | mitochondrion | 34.39 | 31.4 |
| Zm00001d034559_P001 | Maize | extracellular | 31.0 | 30.74 |
| Zm00001d048079_P001 | Maize | extracellular | 29.72 | 30.3 |
| Zm00001d045974_P001 | Maize | extracellular | 26.75 | 30.07 |
| Zm00001d039668_P001 | Maize | plastid | 27.81 | 29.98 |
| Zm00001d013032_P001 | Maize | extracellular | 30.79 | 29.77 |
| Zm00001d011156_P001 | Maize | plastid | 25.9 | 27.98 |
| Zm00001d009057_P001 | Maize | extracellular | 24.84 | 27.66 |
| Zm00001d040589_P001 | Maize | extracellular | 28.87 | 27.25 |
| Zm00001d011444_P002 | Maize | extracellular | 31.21 | 27.17 |
| Zm00001d044110_P001 | Maize | extracellular | 31.21 | 27.12 |
| Zm00001d009667_P001 | Maize | extracellular, mitochondrion, plastid | 29.09 | 26.55 |
| Zm00001d040725_P002 | Maize | extracellular, vacuole | 28.03 | 26.29 |
| Zm00001d009167_P001 | Maize | extracellular | 30.15 | 18.54 |
Protein Annotations
| MapMan:50.3.2 | UniProt:A0A1D6MBI9 | ProteinID:AQK88131.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 |
| GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | GO:GO:0016798 | InterPro:Glyco_hydro_28 |
| PFAM:PF00295 | PANTHER:PTHR31375 | PANTHER:PTHR31375:SF4 | InterPro:Pectin_lyase_fold/virulence | SUPFAM:SSF51126 | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI00084537A4 | EnsemblPlantsGene:Zm00001d038875 | EnsemblPlants:Zm00001d038875_P001 | EnsemblPlants:Zm00001d038875_T001 | SEG:seg |
Description
Polygalacturonase
Coordinates
chr6:+:166212064..166214501
Molecular Weight (calculated)
49996.8 Da
IEP (calculated)
5.402
GRAVY (calculated)
-0.064
Length
471 amino acids
Sequence
(BLAST)
(BLAST)
001: MMARGAVLLL LAAAFAAALL PDAAESRILL TLHDFGAVGD GVADDTKALA GAWTAACAAA DDVILNVPAG GTFRIWPLTL AGPCRSEIKL LISGDIVAPE
101: SPQDWGQGQS DQWLHFHKVR DLTVTGGGII DGRGQQWWAQ SLARAQPAPK AVHFEDCQGI SVKGITLQNS QSYHLTFTRS SDVEANYLRV TSPEHSVDTK
201: GIHLVDSYNV HVMDNLISTG DDCVSIVGNC TDVRLRAISC GPGHGISIGT LGVNSSVDYV EKIKVDTLFI SNAENGVRVR TTENGGGGGF ARKVKFESIV
301: MRNVTNPIIV DQGISSDDPP PSSPEAVALV HHTLIRLPSL SAFTPRDAAA YISVRQAVSL NSRAGKFCAA QAATASAAVQ VEKINYIDIT GTSASERAVT
401: FSCSDARPCR RLSLDNVNLT QVDGSEASSY CRQAFGRSVG TVVPESCLSK EDFVHHVPPQ RSEEDGEDSE S
101: SPQDWGQGQS DQWLHFHKVR DLTVTGGGII DGRGQQWWAQ SLARAQPAPK AVHFEDCQGI SVKGITLQNS QSYHLTFTRS SDVEANYLRV TSPEHSVDTK
201: GIHLVDSYNV HVMDNLISTG DDCVSIVGNC TDVRLRAISC GPGHGISIGT LGVNSSVDYV EKIKVDTLFI SNAENGVRVR TTENGGGGGF ARKVKFESIV
301: MRNVTNPIIV DQGISSDDPP PSSPEAVALV HHTLIRLPSL SAFTPRDAAA YISVRQAVSL NSRAGKFCAA QAATASAAVQ VEKINYIDIT GTSASERAVT
401: FSCSDARPCR RLSLDNVNLT QVDGSEASSY CRQAFGRSVG TVVPESCLSK EDFVHHVPPQ RSEEDGEDSE S
001: MMDKLFILSL LGLLLVTAYG AAGKMVYTDL DILDELENFD VLVDDDDDTK LLDWPSFTSR HSGKNLVNVD TFGAAGDGVS DDTQAFVSAW SKACSTSKSV
101: FLVPEGRRYL VNATKFNGPC EQKLIIQIDG TIVAPDEPSN WDSKFQRIWL EFSKLKGVVF QGKGVIDGSG SKWWAASCKK NKSNPCKSAP TALTIESSSG
201: VKVSGLTIQN SQQMNFIIAR SDSVRVSKVM VSSPGDSPNT DGIHITGSTN VILQDCKIGT GDDCVSIVNA SSNIKMKNIY CGPGHGISIG SLGKDNTTGI
301: VTQVVLDTAL LRETTNGLRI KTYQGGSGYV QGIRFTNVEM QDVANPILID QFYCDSPTTC QNQTSAVKIS QIMYRNITGT TKSAKAIKFA CSDTVPCSHI
401: VLNNVNLEGN DGQVEAYCNS AEGFGYGVIH PSADCLYSHD DKGLDQTHKS EEAETGHDEL
101: FLVPEGRRYL VNATKFNGPC EQKLIIQIDG TIVAPDEPSN WDSKFQRIWL EFSKLKGVVF QGKGVIDGSG SKWWAASCKK NKSNPCKSAP TALTIESSSG
201: VKVSGLTIQN SQQMNFIIAR SDSVRVSKVM VSSPGDSPNT DGIHITGSTN VILQDCKIGT GDDCVSIVNA SSNIKMKNIY CGPGHGISIG SLGKDNTTGI
301: VTQVVLDTAL LRETTNGLRI KTYQGGSGYV QGIRFTNVEM QDVANPILID QFYCDSPTTC QNQTSAVKIS QIMYRNITGT TKSAKAIKFA CSDTVPCSHI
401: VLNNVNLEGN DGQVEAYCNS AEGFGYGVIH PSADCLYSHD DKGLDQTHKS EEAETGHDEL
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I672]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.