Factsheet for TraesCS1A01G365300.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G370800.1	Wheat	extracellular	95.86	96.08
TraesCS1B01G382800.1	Wheat	extracellular	94.94	95.16
HORVU1Hr1G079130.2	Barley	extracellular	91.26	91.47
TraesCS3A01G024500.1	Wheat	extracellular	85.98	84.62
Os05t0542900-01	Rice	extracellular	65.98	64.49
Zm00001d038875_P001	Maize	extracellular	60.23	55.63
KXG22449	Sorghum	extracellular, golgi	59.31	55.13
TraesCS1A01G365200.1	Wheat	extracellular	56.55	53.59
TraesCS1A01G364800.2	Wheat	extracellular	48.97	51.45
KRH09752	Soybean	extracellular	40.92	38.86
VIT_09s0002g06380.t01	Wine grape	cytosol	36.78	38.65
Solyc03g116500.2.1	Tomato	nucleus	39.31	37.83
PGSC0003DMT400001638	Potato	extracellular, plastid	38.85	37.64
CDY54312	Canola	extracellular	37.47	36.71
GSMUA_Achr3P13670_001	Banana	extracellular	37.93	36.26
Bra003555.1-P	Field mustard	extracellular	37.24	36.24
CDY57689	Canola	extracellular	37.24	36.24
Solyc06g068040.2.1	Tomato	nucleus	36.09	35.93
AT1G80170.1	Thale cress	extracellular	36.55	35.81
TraesCS2A01G405300.1	Wheat	extracellular, nucleus	31.72	34.07
TraesCS2A01G405600.1	Wheat	extracellular	24.83	33.86
TraesCS5A01G459000.1	Wheat	extracellular	31.49	33.5
TraesCS5A01G459100.1	Wheat	extracellular	31.95	33.41
TraesCS7A01G162500.1	Wheat	extracellular	32.18	33.33
TraesCS4A01G066700.1	Wheat	extracellular	32.64	32.79
TraesCS2A01G405100.1	Wheat	extracellular	30.8	32.13
TraesCS1A01G124300.1	Wheat	extracellular, plastid	31.03	31.18
TraesCS1A01G311100.1	Wheat	extracellular	34.02	30.58
TraesCS3A01G129500.1	Wheat	extracellular	28.05	29.98
TraesCS6A01G084500.1	Wheat	extracellular, golgi, vacuole	36.09	29.9
TraesCS3A01G129400.1	Wheat	extracellular	27.36	29.02
TraesCS1A01G418000.1	Wheat	extracellular	31.72	27.06
TraesCS7A01G330000.1	Wheat	extracellular	29.43	26.23
TraesCS3A01G225800.2	Wheat	extracellular	32.18	25.97

Protein Annotations

EnsemblPlants:TraesCS1A01G365300.1	EnsemblPlantsGene:TraesCS1A01G365300	Gene3D:2.160.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31375	PANTHER:PTHR31375:SF4	PFAM:PF00295	SEG:seg
SignalP:SignalP-noTM	SUPFAM:SSF51126	TMHMM:TMhelix	MapMan:50.3.2	:	:

Description

No Description!

Coordinates

chr1A:+:544492873..544494699

Molecular Weight (calculated)

46171.3 Da

IEP (calculated)

4.695

GRAVY (calculated)

-0.111

Length

435 amino acids

Sequence
(BLAST)

001: MALPARPRAR LLLAAIAGAV ALLLPGAAEA RVLLSLDDFG AVGDGIANDT QAFVDAWEAA CATGGNTYLN VPAGKSYQIW PVTLAGPCRG EINLMISGNI
101: IAPESPEEWA DGDQGRWLHF SGVGDLSLSG GGIVDGRGQQ WWAGACEDEN CTSYRQHQVA PMALHFEDCQ DVSVKGLTLQ NSQRQHLVFT RCYNVEANYL
201: RVTSPEYSPG TAGVLVVSST NVHIKDDLFS VGGDCVSIVG NCSDVRLRAI SCGPGLGISI GGLGENQSNH KIEKIKTDTM FISNTKNGVR VKTYEDGCGF
301: ARKVKFAQIM MRNVANPIVI DQHYSASNRG TRCGAPNGSA VAVENINYID ITGTSATEQA VTFACSDAMP CRRLYLDGVN LTTAGGDSTS AFCHQAFGKH
401: VGDVLPESCL GKEDFVQLQA PTAGDAQDEE DAADW

Best Arabidopsis Sequence Match ( AT1G23460.1 )
(BLAST)

001: MMDKLFILSL LGLLLVTAYG AAGKMVYTDL DILDELENFD VLVDDDDDTK LLDWPSFTSR HSGKNLVNVD TFGAAGDGVS DDTQAFVSAW SKACSTSKSV
101: FLVPEGRRYL VNATKFNGPC EQKLIIQIDG TIVAPDEPSN WDSKFQRIWL EFSKLKGVVF QGKGVIDGSG SKWWAASCKK NKSNPCKSAP TALTIESSSG
201: VKVSGLTIQN SQQMNFIIAR SDSVRVSKVM VSSPGDSPNT DGIHITGSTN VILQDCKIGT GDDCVSIVNA SSNIKMKNIY CGPGHGISIG SLGKDNTTGI
301: VTQVVLDTAL LRETTNGLRI KTYQGGSGYV QGIRFTNVEM QDVANPILID QFYCDSPTTC QNQTSAVKIS QIMYRNITGT TKSAKAIKFA CSDTVPCSHI
401: VLNNVNLEGN DGQVEAYCNS AEGFGYGVIH PSADCLYSHD DKGLDQTHKS EEAETGHDEL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I672]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.