Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 7
- plastid 1
- vacuole 5
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY54312 | Canola | extracellular | 86.26 | 86.26 |
| CDY57689 | Canola | extracellular | 85.59 | 85.01 |
| Bra003555.1-P | Field mustard | extracellular | 84.91 | 84.34 |
| VIT_09s0002g06380.t01 | Wine grape | cytosol | 49.77 | 53.38 |
| Solyc03g116500.2.1 | Tomato | nucleus | 53.38 | 52.43 |
| Solyc06g068040.2.1 | Tomato | nucleus | 51.35 | 52.17 |
| PGSC0003DMT400001638 | Potato | extracellular, plastid | 52.7 | 52.12 |
| KRH09752 | Soybean | extracellular | 53.38 | 51.75 |
| GSMUA_Achr3P13670_001 | Banana | extracellular | 52.48 | 51.21 |
| EES18597 | Sorghum | extracellular | 41.22 | 44.85 |
| Zm00001d038874_P002 | Maize | extracellular | 41.44 | 44.66 |
| TraesCS1A01G364800.2 | Wheat | extracellular | 40.99 | 43.96 |
| TraesCS1B01G382200.2 | Wheat | extracellular | 40.99 | 43.96 |
| TraesCS1D01G370300.3 | Wheat | extracellular | 40.32 | 43.55 |
| Os05t0542800-02 | Rice | extracellular | 40.54 | 42.25 |
| AT2G41850.1 | Thale cress | extracellular | 40.54 | 41.57 |
| AT3G57510.1 | Thale cress | extracellular | 38.06 | 39.21 |
| AT1G56710.1 | Thale cress | extracellular | 38.06 | 38.94 |
| TraesCS1D01G370700.1 | Wheat | extracellular | 36.71 | 38.9 |
| AT3G07970.1 | Thale cress | extracellular | 38.29 | 38.72 |
| AT1G23460.1 | Thale cress | extracellular | 40.09 | 38.7 |
| AT1G70500.1 | Thale cress | extracellular | 40.77 | 38.68 |
| TraesCS1B01G382700.1 | Wheat | extracellular | 36.49 | 38.66 |
| AT4G35670.1 | Thale cress | extracellular | 34.01 | 38.32 |
| AT5G14650.1 | Thale cress | extracellular | 37.16 | 37.93 |
| Os05t0542900-01 | Rice | extracellular | 37.61 | 37.53 |
| TraesCS1B01G382800.1 | Wheat | extracellular | 36.26 | 37.1 |
| TraesCS1D01G370800.1 | Wheat | extracellular | 36.26 | 37.1 |
| TraesCS3A01G024500.1 | Wheat | extracellular | 36.49 | 36.65 |
| AT1G80140.1 | Thale cress | extracellular | 27.7 | 36.61 |
| TraesCS1A01G365300.1 | Wheat | extracellular | 35.81 | 36.55 |
| AT5G44830.1 | Thale cress | extracellular | 27.25 | 36.45 |
| TraesCS3B01G020300.1 | Wheat | extracellular | 36.26 | 36.34 |
| HORVU1Hr1G079130.2 | Barley | extracellular | 35.36 | 36.18 |
| TraesCS3D01G021700.1 | Wheat | extracellular | 35.36 | 35.6 |
| TraesCS1A01G365200.1 | Wheat | extracellular | 36.71 | 35.51 |
| HORVU3Hr1G006180.2 | Barley | extracellular | 34.23 | 35.35 |
| AT5G44840.1 | Thale cress | extracellular | 31.08 | 35.29 |
| AT4G01890.1 | Thale cress | extracellular | 36.94 | 35.12 |
| AT1G02460.1 | Thale cress | extracellular | 38.74 | 35.03 |
| Zm00001d038875_P001 | Maize | extracellular | 36.49 | 34.39 |
| AT5G39910.1 | Thale cress | extracellular | 28.83 | 34.32 |
| KXG22449 | Sorghum | extracellular, golgi | 36.04 | 34.19 |
| AT1G48100.1 | Thale cress | extracellular | 36.26 | 33.89 |
| HORVU1Hr1G079140.6 | Barley | plastid | 36.94 | 33.54 |
| AT3G15720.1 | Thale cress | extracellular | 34.01 | 33.11 |
| AT5G17200.1 | Thale cress | extracellular | 31.31 | 33.02 |
| AT4G32370.1 | Thale cress | extracellular | 24.77 | 32.16 |
| AT3G26610.1 | Thale cress | extracellular | 34.01 | 32.13 |
| AT5G27530.1 | Thale cress | cytosol | 32.43 | 31.44 |
| AT1G10640.1 | Thale cress | extracellular, golgi | 36.49 | 30.45 |
| AT1G60590.1 | Thale cress | extracellular | 36.26 | 29.81 |
| AT4G32380.1 | Thale cress | extracellular | 29.28 | 28.7 |
| AT4G32375.1 | Thale cress | extracellular | 22.3 | 23.4 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:50.3.2 | EntrezGene:844357 | ProteinID:AAD55489.1 | ProteinID:AEE36366.1 | ArrayExpress:AT1G80170 |
| EnsemblPlantsGene:AT1G80170 | RefSeq:AT1G80170 | TAIR:AT1G80170 | RefSeq:AT1G80170-TAIR-G | EnsemblPlants:AT1G80170.1 | TAIR:AT1G80170.1 |
| EMBL:AY046002 | EMBL:AY142668 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005618 | GO:GO:0005623 | GO:GO:0005975 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009505 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 |
| GO:GO:0016798 | GO:GO:0030312 | GO:GO:0071555 | InterPro:Glyco_hydro_28 | InterPro:IPR012334 | RefSeq:NP_565232.1 |
| PFAM:PF00295 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020100 | PO:PO:0025022 | ScanProsite:PS00502 |
| PANTHER:PTHR31375 | PANTHER:PTHR31375:SF91 | InterPro:PbH1 | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | UniProt:Q94AJ5 |
| SMART:SM00710 | SUPFAM:SSF51126 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI00000AC38E | SEG:seg |
Description
Probable polygalacturonase At1g80170 [Source:UniProtKB/Swiss-Prot;Acc:Q94AJ5]
Coordinates
chr1:-:30153213..30155894
Molecular Weight (calculated)
48174.3 Da
IEP (calculated)
8.385
GRAVY (calculated)
-0.182
Length
444 amino acids
Sequence
(BLAST)
(BLAST)
001: MSYSRGGTLV TLLLLLVVAS SLALTANANS FESLLQLPRR QSRSTRPRSE RLLHVGNFGA KGNGVTDDTK AFADAWKTAC SSKVKTRILV PENYTCLLRP
101: IDLSGPCKAR LTLQISGTII APNDPDVWEG LNRRKWLYFH GLSRLTVEGG GTVNGMGQEW WERSCKHNHS NPCRGAPTAL TFHKCKNMRV ENLNVIDSQQ
201: MHIALTSCRR VTISGLKVIA PATSPNTDGI HISVSRGIVI DNTTVSTGDD CISIVKNSTQ ISISNIICGP GHGISIGSLG KSKSWEEVRD ITVDTAIISD
301: TANGVRIKTW QGGSGLVSKI IFRNIKMNNV SNPIIIDQYY CDSRKPCANQ TSAISIENIS FVHVRGTSAS KEAIKISCSD SSPCRNILLQ DIDLEPSNGD
401: GFTESFCWEA YGSSSGQVYP PPCLSDDTSF LEQSVQSGIT SAYL
101: IDLSGPCKAR LTLQISGTII APNDPDVWEG LNRRKWLYFH GLSRLTVEGG GTVNGMGQEW WERSCKHNHS NPCRGAPTAL TFHKCKNMRV ENLNVIDSQQ
201: MHIALTSCRR VTISGLKVIA PATSPNTDGI HISVSRGIVI DNTTVSTGDD CISIVKNSTQ ISISNIICGP GHGISIGSLG KSKSWEEVRD ITVDTAIISD
301: TANGVRIKTW QGGSGLVSKI IFRNIKMNNV SNPIIIDQYY CDSRKPCANQ TSAISIENIS FVHVRGTSAS KEAIKISCSD SSPCRNILLQ DIDLEPSNGD
401: GFTESFCWEA YGSSSGQVYP PPCLSDDTSF LEQSVQSGIT SAYL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.