Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 5
- extracellular 7
- vacuole 4
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04708 | Canola | plastid | 54.57 | 90.61 |
| Bra016345.1-P | Field mustard | extracellular | 89.78 | 88.25 |
| CDY54292 | Canola | cytosol | 85.0 | 87.67 |
| Bra024602.1-P | Field mustard | cytosol | 84.13 | 87.56 |
| CDY25786 | Canola | cytosol | 84.57 | 87.22 |
| Bra012375.1-P | Field mustard | cytosol | 84.35 | 87.0 |
| CDY44150 | Canola | extracellular, golgi, plastid | 88.26 | 80.88 |
| CDY41445 | Canola | endoplasmic reticulum | 90.22 | 74.64 |
| AT1G70500.1 | Thale cress | extracellular | 74.78 | 73.5 |
| Solyc09g098270.2.1 | Tomato | cytosol | 63.48 | 67.44 |
| PGSC0003DMT400080722 | Potato | extracellular | 66.96 | 66.96 |
| Solyc04g025440.2.1 | Tomato | extracellular | 66.74 | 66.74 |
| PGSC0003DMT400055713 | Potato | extracellular | 65.43 | 65.72 |
| GSMUA_Achr7P01870_001 | Banana | cytosol | 58.48 | 61.14 |
| GSMUA_Achr4P22100_001 | Banana | extracellular | 58.04 | 57.54 |
| EES04449 | Sorghum | extracellular | 54.57 | 48.27 |
| Zm00001d015129_P001 | Maize | mitochondrion | 51.52 | 45.93 |
| Os02t0130200-01 | Rice | extracellular, golgi | 50.43 | 45.67 |
| TraesCS6B01G118000.2 | Wheat | extracellular, golgi, vacuole | 50.65 | 44.13 |
| HORVU6Hr1G015390.2 | Barley | extracellular, golgi | 50.43 | 43.94 |
| TraesCSU01G113500.1 | Wheat | extracellular, golgi, vacuole | 50.0 | 43.56 |
| TraesCS6A01G084500.1 | Wheat | extracellular, golgi, vacuole | 49.57 | 43.43 |
| AT2G41850.1 | Thale cress | extracellular | 38.91 | 41.34 |
| AT3G57510.1 | Thale cress | extracellular | 37.61 | 40.14 |
| AT1G80170.1 | Thale cress | extracellular | 38.7 | 40.09 |
| AT1G56710.1 | Thale cress | extracellular | 36.96 | 39.17 |
| AT5G14650.1 | Thale cress | extracellular | 36.96 | 39.08 |
| AT3G07970.1 | Thale cress | extracellular | 36.3 | 38.04 |
| AT1G80140.1 | Thale cress | extracellular | 26.96 | 36.9 |
| AT5G39910.1 | Thale cress | extracellular | 29.57 | 36.46 |
| AT5G44830.1 | Thale cress | extracellular | 25.65 | 35.54 |
| AT4G35670.1 | Thale cress | extracellular | 30.43 | 35.53 |
| AT4G01890.1 | Thale cress | extracellular | 35.87 | 35.33 |
| KRG99363 | Soybean | extracellular | 67.61 | 35.3 |
| AT5G44840.1 | Thale cress | extracellular | 29.35 | 34.53 |
| AT3G15720.1 | Thale cress | extracellular | 34.13 | 34.43 |
| AT1G02460.1 | Thale cress | extracellular | 36.52 | 34.22 |
| AT3G26610.1 | Thale cress | extracellular | 34.57 | 33.83 |
| AT1G48100.1 | Thale cress | extracellular | 34.78 | 33.68 |
| AT5G17200.1 | Thale cress | extracellular | 29.78 | 32.54 |
| AT1G10640.1 | Thale cress | extracellular, golgi | 37.17 | 32.14 |
| AT4G32370.1 | Thale cress | extracellular | 23.48 | 31.58 |
| AT5G27530.1 | Thale cress | cytosol | 30.87 | 31.0 |
| AT1G60590.1 | Thale cress | extracellular | 35.65 | 30.37 |
| AT4G32380.1 | Thale cress | extracellular | 26.74 | 27.15 |
| AT4G32375.1 | Thale cress | extracellular | 22.61 | 24.59 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:50.3.2 | EntrezGene:838954 | ProteinID:AEE30389.1 | ProteinID:ANM57980.1 | ArrayExpress:AT1G23460 |
| EnsemblPlantsGene:AT1G23460 | RefSeq:AT1G23460 | TAIR:AT1G23460 | RefSeq:AT1G23460-TAIR-G | EnsemblPlants:AT1G23460.1 | TAIR:AT1G23460.1 |
| UniProt:F4I672 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005575 | GO:GO:0005576 |
| GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 |
| GO:GO:0016798 | GO:GO:0016829 | GO:GO:0071555 | InterPro:Glyco_hydro_28 | InterPro:IPR012334 | RefSeq:NP_001320451.1 |
| RefSeq:NP_173760.2 | PFAM:PF00295 | PO:PO:0000293 | ScanProsite:PS00502 | PANTHER:PTHR31375 | PANTHER:PTHR31375:SF29 |
| InterPro:PbH1 | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | SMART:SM00710 | SUPFAM:SSF51126 | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI0001505795 | SEG:seg | : | : | : |
Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I672]
Coordinates
chr1:+:8327066..8329782
Molecular Weight (calculated)
49573.4 Da
IEP (calculated)
4.935
GRAVY (calculated)
-0.200
Length
460 amino acids
Sequence
(BLAST)
(BLAST)
001: MMDKLFILSL LGLLLVTAYG AAGKMVYTDL DILDELENFD VLVDDDDDTK LLDWPSFTSR HSGKNLVNVD TFGAAGDGVS DDTQAFVSAW SKACSTSKSV
101: FLVPEGRRYL VNATKFNGPC EQKLIIQIDG TIVAPDEPSN WDSKFQRIWL EFSKLKGVVF QGKGVIDGSG SKWWAASCKK NKSNPCKSAP TALTIESSSG
201: VKVSGLTIQN SQQMNFIIAR SDSVRVSKVM VSSPGDSPNT DGIHITGSTN VILQDCKIGT GDDCVSIVNA SSNIKMKNIY CGPGHGISIG SLGKDNTTGI
301: VTQVVLDTAL LRETTNGLRI KTYQGGSGYV QGIRFTNVEM QDVANPILID QFYCDSPTTC QNQTSAVKIS QIMYRNITGT TKSAKAIKFA CSDTVPCSHI
401: VLNNVNLEGN DGQVEAYCNS AEGFGYGVIH PSADCLYSHD DKGLDQTHKS EEAETGHDEL
101: FLVPEGRRYL VNATKFNGPC EQKLIIQIDG TIVAPDEPSN WDSKFQRIWL EFSKLKGVVF QGKGVIDGSG SKWWAASCKK NKSNPCKSAP TALTIESSSG
201: VKVSGLTIQN SQQMNFIIAR SDSVRVSKVM VSSPGDSPNT DGIHITGSTN VILQDCKIGT GDDCVSIVNA SSNIKMKNIY CGPGHGISIG SLGKDNTTGI
301: VTQVVLDTAL LRETTNGLRI KTYQGGSGYV QGIRFTNVEM QDVANPILID QFYCDSPTTC QNQTSAVKIS QIMYRNITGT TKSAKAIKFA CSDTVPCSHI
401: VLNNVNLEGN DGQVEAYCNS AEGFGYGVIH PSADCLYSHD DKGLDQTHKS EEAETGHDEL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.