Factsheet for Bra024602.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012375.1-P	Field mustard	cytosol	90.95	90.13
CDY44150	Canola	extracellular, golgi, plastid	99.55	87.65
Bra016345.1-P	Field mustard	extracellular	92.76	87.61
AT1G23460.1	Thale cress	extracellular	87.56	84.13
Bra016213.1-P	Field mustard	extracellular	76.02	71.95
Solyc09g098270.2.1	Tomato	cytosol	66.06	67.44
Solyc04g025440.2.1	Tomato	extracellular	67.19	64.57
PGSC0003DMT400080722	Potato	extracellular	66.97	64.35
PGSC0003DMT400055713	Potato	extracellular	66.29	63.97
GSMUA_Achr7P01870_001	Banana	cytosol	58.6	58.86
GSMUA_Achr4P22100_001	Banana	extracellular	58.14	55.39
EES04449	Sorghum	extracellular	54.07	45.96
Zm00001d015129_P001	Maize	mitochondrion	52.04	44.57
Os02t0130200-01	Rice	extracellular, golgi	50.68	44.09
TraesCS6A01G084500.1	Wheat	extracellular, golgi, vacuole	51.58	43.43
HORVU6Hr1G015390.2	Barley	extracellular, golgi	51.81	43.37
TraesCS6B01G118000.2	Wheat	extracellular, golgi, vacuole	51.58	43.18
TraesCSU01G113500.1	Wheat	extracellular, golgi, vacuole	51.36	42.99
Bra029690.1-P	Field mustard	cytosol	37.56	40.89
Bra016911.1-P	Field mustard	extracellular	39.14	39.95
Bra003555.1-P	Field mustard	extracellular	40.05	39.6
Bra007332.1-P	Field mustard	extracellular	38.46	39.35
Bra004655.1-P	Field mustard	extracellular	37.78	39.02
Bra003286.1-P	Field mustard	extracellular	38.01	38.8
Bra016912.1-P	Field mustard	extracellular, nucleus, peroxisome	39.14	38.62
Bra008748.1-P	Field mustard	extracellular	38.01	38.27
Bra027926.1-P	Field mustard	extracellular	37.56	38.16
Bra001279.1-P	Field mustard	extracellular	37.33	37.76
Bra025631.1-P	Field mustard	extracellular	33.48	35.07
Bra025099.1-P	Field mustard	extracellular	31.45	34.75
Bra032600.1-P	Field mustard	extracellular	38.46	34.62
Bra033328.1-P	Field mustard	extracellular	38.24	34.42
Bra018707.1-P	Field mustard	extracellular	36.43	34.11
Bra000911.1-P	Field mustard	extracellular, vacuole	37.33	33.95
KRG99363	Soybean	extracellular	67.65	33.94
Bra001605.1-P	Field mustard	extracellular	34.39	33.63
Bra025103.1-P	Field mustard	extracellular	30.32	33.5
Bra008493.1-P	Field mustard	extracellular	29.41	33.33
Bra027210.1-P	Field mustard	extracellular	33.71	32.68
Bra027211.1-P	Field mustard	extracellular	33.26	32.59
Bra011341.1-P	Field mustard	cytosol	28.96	32.57
Bra025216.1-P	Field mustard	extracellular	33.94	31.91
Bra008572.1-P	Field mustard	extracellular	30.32	30.88
Bra031724.1-P	Field mustard	extracellular	35.97	30.87
Bra023600.1-P	Field mustard	extracellular	29.86	30.84
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	36.43	30.21
Bra027148.1-P	Field mustard	extracellular	36.2	29.85
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	35.75	29.76
Bra040077.1-P	Field mustard	extracellular	21.04	25.48

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EnsemblPlantsGene:Bra024602	EnsemblPlants:Bra024602.1	EnsemblPlants:Bra024602.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0016798	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4E747	PFAM:PF00295	ScanProsite:PS00502
PANTHER:PTHR31375	PANTHER:PTHR31375:SF29	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	UniParc:UPI0002542985
SEG:seg	:	:	:	:	:

Description

AT1G23460 (E=1e-213) | polygalacturonase

Coordinates

chrA09:-:24105646..24107734

Molecular Weight (calculated)

47451.5 Da

IEP (calculated)

4.604

GRAVY (calculated)

-0.284

Length

442 amino acids

Sequence
(BLAST)

001: MVYTDLDILE KLENFDIPED DAGDDYDSKV FDLPSFSSGK NLVSVDTFGA AGDGVSDDTQ AFVSAWNKAC GTPKSVLLVP QGRSYLINAT KFNGPCEQKL
101: VIQIDGTIVA PDEPSNWDPK LQRTWLEFSK LEGIVFQGNG VIDGSGSKWW AASCKKNKSN PCKSAPTALT IDSSSGVKVS GLTIQNSQQM NFIIARSDSV
201: RVSKVMVSSP GDSPNTDGIH ITGSTNVVLQ DCKIGTGDDC VSIVNGSSNI KMKRIYCGPG HGISIGSLGN NNSTGIVTKV VLDTALLRET TNGLRIKTYQ
301: GGSGYVQDVR FTNVEMQDVS NPILIDQFYC DNPTSCQNQT SAVKISQIMY RNITGTTKSE KAIKFACSDT VPCSHIVLNN VNLEGKDGQV EAYCNSAEGF
401: GYGVIHPSAD CLYSHDDKGF DQSHTSGPVL VTEEAEIGHD EL

Best Arabidopsis Sequence Match ( AT1G23460.1 )
(BLAST)

001: MMDKLFILSL LGLLLVTAYG AAGKMVYTDL DILDELENFD VLVDDDDDTK LLDWPSFTSR HSGKNLVNVD TFGAAGDGVS DDTQAFVSAW SKACSTSKSV
101: FLVPEGRRYL VNATKFNGPC EQKLIIQIDG TIVAPDEPSN WDSKFQRIWL EFSKLKGVVF QGKGVIDGSG SKWWAASCKK NKSNPCKSAP TALTIESSSG
201: VKVSGLTIQN SQQMNFIIAR SDSVRVSKVM VSSPGDSPNT DGIHITGSTN VILQDCKIGT GDDCVSIVNA SSNIKMKNIY CGPGHGISIG SLGKDNTTGI
301: VTQVVLDTAL LRETTNGLRI KTYQGGSGYV QGIRFTNVEM QDVANPILID QFYCDSPTTC QNQTSAVKIS QIMYRNITGT TKSAKAIKFA CSDTVPCSHI
401: VLNNVNLEGN DGQVEAYCNS AEGFGYGVIH PSADCLYSHD DKGLDQTHKS EEAETGHDEL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I672]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.