Factsheet for Bra019912.1-P

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular, vacuole

Predictor Summary:

nucleus 1
cytosol 1
extracellular 4
endoplasmic reticulum 3
vacuole 4
plasma membrane 4
golgi 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi, vacuole
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93397	Canola	extracellular, golgi, vacuole	100.0	100.0
Bra031724.1-P	Field mustard	extracellular	89.31	92.43
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	90.43	90.77
AT1G10640.1	Thale cress	extracellular, golgi	88.56	88.72
Bra027148.1-P	Field mustard	extracellular	78.24	77.8
VIT_01s0127g00400.t01	Wine grape	extracellular, mitochondrion, plastid	68.67	70.66
Solyc05g005170.2.1	Tomato	nucleus	65.67	68.9
PGSC0003DMT400035162	Potato	extracellular	65.85	68.69
HORVU3Hr1G031180.1	Barley	extracellular	18.01	68.09
Os05t0578600-01	Rice	cytosol, extracellular	38.84	66.35
KRG99364	Soybean	extracellular, nucleus	66.42	65.8
KRH45648	Soybean	nucleus	66.04	65.43
Os01t0637500-00	Rice	cytosol, extracellular	41.09	64.79
GSMUA_Achr6P22080_001	Banana	extracellular	57.6	63.3
GSMUA_Achr5P09080_001	Banana	extracellular	57.6	63.04
GSMUA_Achr4P02960_001	Banana	extracellular	56.1	62.95
Bra008748.1-P	Field mustard	extracellular	50.09	60.82
GSMUA_Achr1P27280_001	Banana	extracellular	55.72	58.24
TraesCS1A01G418000.1	Wheat	extracellular	55.53	58.04
HORVU3Hr1G056270.10	Barley	extracellular	57.6	57.71
TraesCS3A01G225800.2	Wheat	extracellular	58.35	57.7
EES01142	Sorghum	extracellular	57.41	57.52
TraesCS1B01G448100.1	Wheat	extracellular	56.85	57.17
TraesCS3D01G223900.1	Wheat	extracellular	57.41	57.09
Zm00001d044110_P001	Maize	extracellular	57.79	56.83
Zm00001d011444_P002	Maize	extracellular	57.6	56.75
TraesCS3B01G258600.2	Wheat	extracellular	57.04	56.61
EES20001	Sorghum	extracellular	57.04	56.61
TraesCS1D01G425600.1	Wheat	extracellular	55.53	56.17
Os01t0636500-01	Rice	extracellular	56.29	55.76
HORVU1Hr1G091430.5	Barley	extracellular	57.41	55.23
Zm00001d009667_P001	Maize	extracellular, mitochondrion, plastid	52.91	54.65
Bra025216.1-P	Field mustard	extracellular	39.77	45.11
Bra018707.1-P	Field mustard	extracellular	38.27	43.22
Bra027926.1-P	Field mustard	extracellular	33.77	41.38
Bra032600.1-P	Field mustard	extracellular	37.71	40.94
Bra000911.1-P	Field mustard	extracellular, vacuole	36.96	40.53
Bra033328.1-P	Field mustard	extracellular	36.77	39.92
Bra003555.1-P	Field mustard	extracellular	31.71	37.81
Bra025099.1-P	Field mustard	extracellular	27.39	36.5
Bra024602.1-P	Field mustard	cytosol	30.21	36.43
Bra029690.1-P	Field mustard	cytosol	27.58	36.21
Bra012375.1-P	Field mustard	cytosol	30.21	36.1
Bra025103.1-P	Field mustard	extracellular	27.02	36.0
Bra016213.1-P	Field mustard	extracellular	31.52	35.97
Bra025631.1-P	Field mustard	extracellular	28.14	35.55
Bra003286.1-P	Field mustard	extracellular	28.71	35.33
Bra016345.1-P	Field mustard	extracellular	30.96	35.26
Bra007332.1-P	Field mustard	extracellular	28.33	34.95
Bra004655.1-P	Field mustard	extracellular	27.95	34.81
Bra008493.1-P	Field mustard	extracellular	24.77	33.85
Bra016911.1-P	Field mustard	extracellular	27.2	33.49
Bra001279.1-P	Field mustard	extracellular	27.39	33.41
Bra016912.1-P	Field mustard	extracellular, nucleus, peroxisome	27.2	32.37
Bra023600.1-P	Field mustard	extracellular	25.14	31.31
Bra001605.1-P	Field mustard	extracellular	26.08	30.75
Bra027211.1-P	Field mustard	extracellular	25.33	29.93
Bra011341.1-P	Field mustard	cytosol	21.95	29.77
Bra027210.1-P	Field mustard	extracellular	25.33	29.61
Bra008572.1-P	Field mustard	extracellular	24.02	29.49
Bra040077.1-P	Field mustard	extracellular	16.89	24.66

Protein Annotations

MapMan:50.3.2	EnsemblPlantsGene:Bra019912	EnsemblPlants:Bra019912.1	EnsemblPlants:Bra019912.1-P	GO:GO:0003674	GO:GO:0003824
GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28
UniProt:M4DTR9	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF58	InterPro:PbH1
InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000253EA8E
SEG:seg	:	:	:	:	:

Description

AT1G10640 (E=2e-240) | polygalacturonase

Coordinates

chrA06:-:3733432..3735933

Molecular Weight (calculated)

58708.3 Da

IEP (calculated)

8.367

GRAVY (calculated)

-0.379

Length

533 amino acids

Sequence
(BLAST)

001: MMMRKGLRLR SITMVMLMAV LVWSVTLETC IARRGRHWRH NHRSSSDLSD SLSSKKPKSH GNSHHNSHNN NNNHHQKSKP KPKPKQKTPP KADDNNSPVI
101: SPPPKVQPPS LPPLKGSQVF NVMNFGAKGD GKCDDTKAFE AAWAAACKVE ASMMTVPPEY TFLVGPISFS GPYCQANIVF QLDGTIIAPT DSKSWGKGLM
201: WWLEFTKLKG IKVQGKGVID GRGSGWWQQD YPFIDGETKL IVPLNNSVHQ NPPMPERSEL DWKMPSIKPT ALRFYGSIGV EVSGITIQNS PQCHLKFDNC
301: IDVEVHDMSV SSPGDSPNTD GIHLQNSRDV LIHSTTLACG DDCISIQTGC SNVFVHNVNC GPGHGISIGS LGKDSTKACV SNITVRDVAM HNTMTGVRIK
401: TWQGGVGSVK GILFSNIQLN EVQLPIVIDQ FYCDHSKCKN QTSAVAVEGV TYERIKGTYT VKPVHFACSD NFPCVDVQLS AIELKPVQEK YHMSDPFCWQ
501: TFGELNTPTL PPIDCLQIGK PARNRVQSDH DVC

Best Arabidopsis Sequence Match ( AT1G10640.1 )
(BLAST)

001: MIMRRSLSLR SITMMILMAV LVWSVTLETC IARRGRHWRH SHRSSSDLSD SLSNKKPKSH GNSHHHSSHN NNHHHKSKPK PKPKLKTPPK AHDNNSPVVS
101: GPPKVQPPPL PPQKGSQVFN VMDFGAKGDG KCDDTKAFEA AWVAACKIEA SVMLVPPEYT YLVGPISFSG PYCQANIVFQ LDGTIIAPTD SKTWGKGLMW
201: WIDFTKLKGI KVQGKGVIDG RGSGWWQQDS PFIDSDTKLI VPLNNSANQN PPMPIRSELD ERMPSIKPTA LRFSGSFGVE VTGITIQNSP QCHLKFDDCV
301: GVVVHDIAVS SPGDSPNTDG IHLQNTKDVL IHSTTLACGD DCISIQTGCS NVFVHNVNCG PGHGISIGSL GKEGTKACVS NITVRDVAMH NTMTGVRIKT
401: WQGGVGSVKG IIFSNIQLNQ VQIPITINQF YCDHSKCKNQ TSAVAVEGVT YERIKGTYTV KPVHFACSDN FPCVDVQLSS IELKPVQEKY RMYDAYCWQT
501: FGELNTPTLP PIDCLKIGKP PRNKVQSDHD VC

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I5U6]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.