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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, golgi, vacuole

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • extracellular 4
  • golgi 4
  • plasma membrane 4
  • endoplasmic reticulum 3
  • vacuole 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, golgi, vacuole
Any Predictor:cytosol, mitochondrion, nucleus, secretory
BaCelLo:nucleus
EpiLoc:cytosol
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:mitochondrion
WoLF PSORT:vacuole
YLoc:golgi
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra019912.1-P Field mustard extracellular, golgi, vacuole 100.0 100.0
CDY37962 Canola extracellular, golgi, vacuole 98.69 98.87
CDY34877 Canola extracellular, golgi 84.43 92.02
CDY54228 Canola extracellular, golgi, vacuole 90.24 91.1
CDY20612 Canola extracellular 90.43 90.77
CDY20962 Canola extracellular, golgi, vacuole 90.06 90.4
AT1G10640.1 Thale cress extracellular, golgi 88.56 88.72
CDY47212 Canola extracellular 78.24 77.8
CDY50367 Canola extracellular, golgi 78.05 77.61
VIT_01s0127g00400.t01 Wine grape extracellular, mitochondrion, plastid 68.67 70.66
Solyc05g005170.2.1 Tomato nucleus 65.67 68.9
PGSC0003DMT400035162 Potato extracellular 65.85 68.69
HORVU3Hr1G031180.1 Barley extracellular 18.01 68.09
Os05t0578600-01 Rice cytosol, extracellular 38.84 66.35
KRG99364 Soybean extracellular, nucleus 66.42 65.8
KRH45648 Soybean nucleus 66.04 65.43
Os01t0637500-00 Rice cytosol, extracellular 41.09 64.79
GSMUA_Achr6P22080_001 Banana extracellular 57.6 63.3
GSMUA_Achr5P09080_001 Banana extracellular 57.6 63.04
GSMUA_Achr4P02960_001 Banana extracellular 56.1 62.95
CDX69569 Canola extracellular 50.09 60.82
CDY09873 Canola extracellular 49.91 60.59
GSMUA_Achr1P27280_001 Banana extracellular 55.72 58.24
TraesCS1A01G418000.1 Wheat extracellular 55.53 58.04
HORVU3Hr1G056270.10 Barley extracellular 57.6 57.71
TraesCS3A01G225800.2 Wheat extracellular 58.35 57.7
EES01142 Sorghum extracellular 57.41 57.52
TraesCS1B01G448100.1 Wheat extracellular 56.85 57.17
TraesCS3D01G223900.1 Wheat extracellular 57.41 57.09
Zm00001d044110_P001 Maize extracellular 57.79 56.83
Zm00001d011444_P002 Maize extracellular 57.6 56.75
TraesCS3B01G258600.2 Wheat extracellular 57.04 56.61
EES20001 Sorghum extracellular 57.04 56.61
TraesCS1D01G425600.1 Wheat extracellular 55.53 56.17
Os01t0636500-01 Rice extracellular 56.29 55.76
HORVU1Hr1G091430.5 Barley extracellular 57.41 55.23
Zm00001d009667_P001 Maize extracellular, mitochondrion, plastid 52.91 54.65
CDY13645 Canola extracellular 39.77 45.11
CDY67535 Canola extracellular 26.27 45.02
CDX83631 Canola extracellular 39.21 44.37
CDY43307 Canola extracellular 38.65 43.55
CDX93644 Canola extracellular 38.27 43.22
CDX95284 Canola extracellular 31.71 41.83
CDY41695 Canola extracellular 33.96 41.61
CDX77909 Canola extracellular 37.34 40.53
CDX89966 Canola extracellular 37.15 40.33
CDY15246 Canola extracellular 37.15 40.33
CDY57689 Canola extracellular 31.71 37.81
CDY54312 Canola extracellular 31.33 37.61
CDY04708 Canola plastid 19.32 37.18
CDY50769 Canola extracellular 23.83 37.13
CDY39399 Canola extracellular 27.58 36.75
CDY38648 Canola cytosol 25.7 36.63
CDY39404 Canola extracellular 27.39 36.59
CDY56952 Canola extracellular 28.89 36.58
CDY69377 Canola extracellular 27.39 36.5
CDY37571 Canola cytosol 25.52 36.36
CDY54292 Canola cytosol 30.39 36.32
CDY25786 Canola cytosol 30.39 36.32
CDY71357 Canola extracellular, vacuole 21.58 36.28
CDX74418 Canola extracellular 28.71 36.26
CDX73440 Canola extracellular 27.2 36.25
CDY47139 Canola extracellular 31.52 35.97
CDY11585 Canola extracellular 31.52 35.97
CDY47032 Canola extracellular 26.83 35.48
CDX67693 Canola extracellular 28.71 35.33
CDX72553 Canola extracellular 26.64 35.24
CDY48768 Canola extracellular 28.71 35.17
CDX79907 Canola extracellular 28.52 34.94
CDX72025 Canola extracellular 28.14 34.72
CDY35976 Canola extracellular 26.83 33.97
CDY07963 Canola extracellular 27.77 33.79
CDY28005 Canola extracellular 26.64 33.73
CDY14791 Canola extracellular 27.39 33.72
CDX74019 Canola extracellular 27.39 33.41
CDY06902 Canola extracellular 27.02 33.26
CDX85471 Canola extracellular 25.14 33.0
CDY44150 Canola extracellular, golgi, plastid 30.39 32.27
CDY02729 Canola extracellular 25.52 31.78
CDX75843 Canola extracellular 26.08 30.68
CDY58462 Canola extracellular 25.7 30.24
CDX97703 Canola extracellular 25.33 29.87
CDY30105 Canola extracellular 25.14 29.84
CDY16952 Canola extracellular 24.2 29.72
CDY41445 Canola endoplasmic reticulum 30.96 29.68
CDX97704 Canola extracellular 25.33 29.61
CDY30107 Canola extracellular 25.14 29.39
CDX68839 Canola cytosol 22.14 29.06
CDX75239 Canola cytosol 21.95 28.82
CDX69397 Canola extracellular 21.39 28.22
CDY39884 Canola extracellular 23.08 27.64
CDY61868 Canola extracellular 28.14 27.32
CDY06100 Canola extracellular 18.76 23.42
Protein Annotations
MapMan:50.3.2GO:A0A078DWV8EnsemblPlants:CDX93397ProteinID:CDX93397ProteinID:CDX93397.1GO:GO:0003674
GO:GO:0003824GO:GO:0004650GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0009987
GO:GO:0016043GO:GO:0016787GO:GO:0071555EnsemblPlantsGene:GSBRNA2T00156056001InterPro:Glyco_hydro_28PFAM:PF00295
ScanProsite:PS00502PANTHER:PTHR31375PANTHER:PTHR31375:SF58InterPro:PbH1InterPro:Pectin_lyase_fold/virulenceSMART:SM00710
SUPFAM:SSF51126SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI000253EA8ESEG:seg:
Description
BnaA06g06510D
Coordinates
chrLK031876:+:38787..41664
Molecular Weight (calculated)
58708.3 Da
IEP (calculated)
8.367
GRAVY (calculated)
-0.379
Length
533 amino acids
Sequence
(BLAST)
001: MMMRKGLRLR SITMVMLMAV LVWSVTLETC IARRGRHWRH NHRSSSDLSD SLSSKKPKSH GNSHHNSHNN NNNHHQKSKP KPKPKQKTPP KADDNNSPVI
101: SPPPKVQPPS LPPLKGSQVF NVMNFGAKGD GKCDDTKAFE AAWAAACKVE ASMMTVPPEY TFLVGPISFS GPYCQANIVF QLDGTIIAPT DSKSWGKGLM
201: WWLEFTKLKG IKVQGKGVID GRGSGWWQQD YPFIDGETKL IVPLNNSVHQ NPPMPERSEL DWKMPSIKPT ALRFYGSIGV EVSGITIQNS PQCHLKFDNC
301: IDVEVHDMSV SSPGDSPNTD GIHLQNSRDV LIHSTTLACG DDCISIQTGC SNVFVHNVNC GPGHGISIGS LGKDSTKACV SNITVRDVAM HNTMTGVRIK
401: TWQGGVGSVK GILFSNIQLN EVQLPIVIDQ FYCDHSKCKN QTSAVAVEGV TYERIKGTYT VKPVHFACSD NFPCVDVQLS AIELKPVQEK YHMSDPFCWQ
501: TFGELNTPTL PPIDCLQIGK PARNRVQSDH DVC
Best Arabidopsis Sequence Match ( AT1G10640.1 )
(BLAST)
001: MIMRRSLSLR SITMMILMAV LVWSVTLETC IARRGRHWRH SHRSSSDLSD SLSNKKPKSH GNSHHHSSHN NNHHHKSKPK PKPKLKTPPK AHDNNSPVVS
101: GPPKVQPPPL PPQKGSQVFN VMDFGAKGDG KCDDTKAFEA AWVAACKIEA SVMLVPPEYT YLVGPISFSG PYCQANIVFQ LDGTIIAPTD SKTWGKGLMW
201: WIDFTKLKGI KVQGKGVIDG RGSGWWQQDS PFIDSDTKLI VPLNNSANQN PPMPIRSELD ERMPSIKPTA LRFSGSFGVE VTGITIQNSP QCHLKFDDCV
301: GVVVHDIAVS SPGDSPNTDG IHLQNTKDVL IHSTTLACGD DCISIQTGCS NVFVHNVNCG PGHGISIGSL GKEGTKACVS NITVRDVAMH NTMTGVRIKT
401: WQGGVGSVKG IIFSNIQLNQ VQIPITINQF YCDHSKCKNQ TSAVAVEGVT YERIKGTYTV KPVHFACSDN FPCVDVQLSS IELKPVQEKY RMYDAYCWQT
501: FGELNTPTLP PIDCLKIGKP PRNKVQSDHD VC
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I5U6]
SUBAcon: [extracellular,golgi]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.