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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 6
  • golgi 4
  • plasma membrane 4
  • endoplasmic reticulum 4
  • vacuole 4
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:plastid, secretory
BaCelLo:secretory
iPSORT:mitochondrion
MultiLoc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY41695 Canola extracellular 97.28 90.34
AT1G56710.1 Thale cress extracellular 81.19 75.58
CDY67535 Canola extracellular 42.57 55.31
CDX77909 Canola extracellular 55.45 45.62
CDY15246 Canola extracellular 55.2 45.42
CDX89966 Canola extracellular 55.2 45.42
CDX93644 Canola extracellular 51.73 44.28
CDY43307 Canola extracellular 51.49 43.97
CDY71357 Canola extracellular, vacuole 30.69 39.12
CDY04708 Canola plastid 26.24 38.27
CDX69569 Canola extracellular 40.1 36.9
CDY09873 Canola extracellular 40.1 36.9
CDY54312 Canola extracellular 40.35 36.71
CDY57689 Canola extracellular 40.35 36.47
CDX79907 Canola extracellular 37.62 34.94
CDX67693 Canola extracellular 37.38 34.87
CDY54292 Canola cytosol 38.37 34.75
CDY48768 Canola extracellular 37.38 34.71
CDY14791 Canola extracellular 37.13 34.64
CDY06902 Canola extracellular 37.13 34.64
CDY13645 Canola extracellular 40.1 34.47
CDX83631 Canola extracellular 40.1 34.39
CDY25786 Canola cytosol 37.87 34.3
CDX72025 Canola extracellular 36.63 34.26
CDY47139 Canola extracellular 39.11 33.83
CDY11585 Canola extracellular 39.11 33.83
CDY37571 Canola cytosol 31.19 33.69
CDY56952 Canola extracellular 34.65 33.25
CDX74418 Canola extracellular 34.65 33.18
CDY38648 Canola cytosol 30.69 33.16
CDX74019 Canola extracellular 35.4 32.72
CDY07963 Canola extracellular 35.15 32.42
CDY20612 Canola extracellular 42.33 32.2
CDY20962 Canola extracellular, golgi, vacuole 42.33 32.2
CDY54228 Canola extracellular, golgi, vacuole 42.08 32.2
CDY50367 Canola extracellular, golgi 42.08 31.72
CDY47212 Canola extracellular 42.08 31.72
CDX93397 Canola extracellular, golgi, vacuole 41.83 31.71
CDY37962 Canola extracellular, golgi, vacuole 41.58 31.58
CDY44150 Canola extracellular, golgi, plastid 39.11 31.47
CDY35976 Canola extracellular 32.67 31.35
CDY28005 Canola extracellular 32.67 31.35
CDY47032 Canola extracellular 31.19 31.27
CDX85471 Canola extracellular 31.19 31.03
CDY69377 Canola extracellular 30.69 31.0
CDY30105 Canola extracellular 34.41 30.96
CDY39404 Canola extracellular 30.45 30.83
CDX97703 Canola extracellular 34.41 30.75
CDY34877 Canola extracellular, golgi 37.13 30.67
CDY02729 Canola extracellular 32.43 30.61
CDX72553 Canola extracellular 30.45 30.52
CDY58462 Canola extracellular 34.16 30.46
CDY30107 Canola extracellular 34.16 30.26
CDX97704 Canola extracellular 34.16 30.26
CDX73440 Canola extracellular 29.95 30.25
CDX75843 Canola extracellular 33.91 30.24
CDX69397 Canola extracellular 30.2 30.2
CDY50769 Canola extracellular 25.5 30.12
CDY39399 Canola extracellular 29.7 30.0
CDY16952 Canola extracellular 31.68 29.49
CDY41445 Canola endoplasmic reticulum 38.86 28.24
CDX68839 Canola cytosol 28.22 28.08
CDX75239 Canola cytosol 27.97 27.83
CDY61868 Canola extracellular 36.14 26.59
CDY39884 Canola extracellular 26.73 24.27
CDY06100 Canola extracellular 23.51 22.25
Protein Annotations
Gene3D:2.160.20.10MapMan:50.3.2GO:A0A078E413EnsemblPlants:CDX95284ProteinID:CDX95284ProteinID:CDX95284.1
GO:GO:0003674GO:GO:0003824GO:GO:0004650GO:GO:0005975GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0016043GO:GO:0016787GO:GO:0071555EnsemblPlantsGene:GSBRNA2T00100922001InterPro:Glyco_hydro_28
InterPro:IPR012334PFAM:PF00295ScanProsite:PS00502PANTHER:PTHR31375PANTHER:PTHR31375:SF13InterPro:PbH1
InterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulenceSMART:SM00710SUPFAM:SSF51126SignalP:SignalP-noTMUniParc:UPI0004EEDDAD
Description
BnaC09g15860D
Coordinates
chrLK031887:-:1171648..1178196
Molecular Weight (calculated)
44331.6 Da
IEP (calculated)
6.814
GRAVY (calculated)
-0.021
Length
404 amino acids
Sequence
(BLAST)
001: MSFASKLLYA FFLILLSSSR VTHNMNISPS PAPNPAYYDD NNNVFDVTSF GAIGDCRTDD TSAFNMAWDT ACMTTGVDSA VLLVPYTFCF LVKPTSFNGP
101: CRTRLTLQID GIIVSPDGPK SWAWNFKRQW LMFYRGVNGT TQPGPCDSPV AVRIFQSSKV KIKGLAFKNS AQFHVRFDNC DDVVVDSVTI NAPASSPNTD
201: GIHIENTHNV QIRNSVISNG DDCVSIGAGC FNVDIKNITC GPSHGISIGS LGVHNSSAWV SNITVTNSTI WNSDNGVRIK TWQGGSGLVS RIVFRNILMV
301: NVRNAIMIDQ YYCQTKNCAN QTSAVIISDV LYANIKGSYD LRSPPMHFGC SDSFPCTNLR LEDVDLFPYK GQLFENPFCW NAYGSMQTVT VPPINCLLEA
401: LPGY
Best Arabidopsis Sequence Match ( AT1G56710.1 )
(BLAST)
001: MSLPNSLFYT FFLILFSTIR IAQSIYLSPS PAPNPAYNDN DNIAPTVFDV TSFGAIGDCS TDDTSAFKMA WDAACMSTGP KSALLLVPYT FCFLVKPTTF
101: NGPCRTNLVL QIDGFIVSPD GPRSWPSNYQ RQWMMFYRVN GLSIQGSGVI NGRGQKWWNL PCKPHKGLNG TTQTGPCDSP VAIRLFQSSK VRIQGINFMN
201: SAQFHVRFDN CSDVVVDSVI IKAPASSPNT DGIHIENTHN VQIRNSMISN GDDCISIGAG CFNVDIKNVT CGPSHGISIG SLGVHNSQAY VSNITVTNST
301: IWNSDNGVRI KTWQGGSGSV SRIVFSNILM VNVRNPIMID QYYCQTNNCA NQTSAVIISD VLYANIKGTY DLRSPPIHFG CSDSVPCTNL TLTEVDLFPS
401: KGQHLENPFC WNAYGSMKIT VPPVYCLLDA PPDF
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FXC1]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.