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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 7
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 5
  • golgi 5
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY50769 Canola extracellular 79.75 93.27
CDY39399 Canola extracellular 92.0 92.0
CDY69377 Canola extracellular 87.5 87.5
CDY39404 Canola extracellular 86.0 86.22
AT5G44840.1 Thale cress extracellular 71.25 72.89
AT5G44830.1 Thale cress extracellular 59.75 71.99
CDY47032 Canola extracellular 55.75 55.34
CDX72553 Canola extracellular 55.75 55.34
CDX85471 Canola extracellular 41.25 40.64
PGSC0003DMT400056828 Potato extracellular 40.25 40.45
TraesCS2B01G423300.1 Wheat extracellular 40.25 40.15
TraesCS2D01G402100.1 Wheat extracellular 40.25 39.75
PGSC0003DMT400008955 Potato extracellular 34.5 39.66
CDY58462 Canola extracellular 44.75 39.51
TraesCS2B01G423400.1 Wheat plastid 34.5 39.32
CDX75843 Canola extracellular 44.5 39.29
HORVU2Hr1G096130.1 Barley extracellular 39.75 39.26
CDY30105 Canola extracellular 44.0 39.2
TraesCS2A01G405600.1 Wheat extracellular 31.25 39.19
TraesCS2A01G405300.1 Wheat extracellular, nucleus 39.5 39.01
CDX97703 Canola extracellular 44.0 38.94
TraesCS2D01G402200.1 Wheat extracellular 38.0 38.87
CDY02729 Canola extracellular 41.25 38.55
TraesCS2D01G402300.1 Wheat extracellular 32.0 38.44
CDY16952 Canola extracellular 41.5 38.25
CDX97704 Canola extracellular 43.5 38.16
CDY30107 Canola extracellular 43.5 38.16
TraesCS2A01G405100.1 Wheat extracellular 39.5 37.89
KXG26899 Sorghum extracellular 39.5 37.62
CDY39884 Canola extracellular 41.75 37.53
TraesCS2B01G423200.1 Wheat extracellular 39.5 37.18
CDX69397 Canola extracellular 37.5 37.13
CDX68839 Canola cytosol 37.25 36.7
CDX75239 Canola cytosol 37.25 36.7
KRH05150 Soybean extracellular 24.5 36.43
TraesCS2D01G402000.1 Wheat extracellular 38.75 36.22
GSMUA_Achr9P22320_001 Banana extracellular 37.0 35.84
GSMUA_Achr11P... Banana extracellular 37.0 35.58
CDY56952 Canola extracellular 37.0 35.15
CDX74418 Canola extracellular 36.75 34.83
CDY37571 Canola cytosol 32.25 34.49
CDY14791 Canola extracellular 37.25 34.41
CDY54312 Canola extracellular 38.0 34.23
CDY38648 Canola cytosol 32.0 34.22
CDY06902 Canola extracellular 37.0 34.18
GSMUA_Achr4P13200_001 Banana extracellular 35.75 33.89
CDX72025 Canola extracellular 36.5 33.8
CDY57689 Canola extracellular 37.75 33.78
CDX67693 Canola extracellular 36.5 33.72
CDX69569 Canola extracellular 37.0 33.71
CDY09873 Canola extracellular 37.0 33.71
CDX74019 Canola extracellular 36.75 33.64
CDY07963 Canola extracellular 36.5 33.33
CDY28005 Canola extracellular 34.75 33.02
CDY35976 Canola extracellular 34.75 33.02
CDX79907 Canola extracellular 35.75 32.87
CDY48768 Canola extracellular 35.75 32.87
Zm00001d039668_P001 Maize plastid 34.75 31.81
CDY04708 Canola plastid 21.5 31.05
CDY41695 Canola extracellular 33.0 30.34
CDY54292 Canola cytosol 33.75 30.27
CDY25786 Canola cytosol 33.5 30.04
CDY47139 Canola extracellular 35.0 29.98
CDY11585 Canola extracellular 35.0 29.98
CDX95284 Canola extracellular 30.25 29.95
CDY67535 Canola extracellular 23.0 29.58
CDX77909 Canola extracellular 35.0 28.51
CDY13645 Canola extracellular 33.5 28.51
CDX83631 Canola extracellular 33.5 28.45
CDY71357 Canola extracellular, vacuole 22.25 28.08
CDY20612 Canola extracellular 36.25 27.31
CDY44150 Canola extracellular, golgi, plastid 34.25 27.29
CDX93397 Canola extracellular, golgi, vacuole 36.25 27.2
CDY20962 Canola extracellular, golgi, vacuole 36.0 27.12
CDY15246 Canola extracellular 33.25 27.09
CDX89966 Canola extracellular 33.25 27.09
CDY37962 Canola extracellular, golgi, vacuole 36.0 27.07
CDY43307 Canola extracellular 31.75 26.85
CDX93644 Canola extracellular 31.5 26.69
CDY50367 Canola extracellular, golgi 35.5 26.49
CDY47212 Canola extracellular 35.5 26.49
CDY54228 Canola extracellular, golgi, vacuole 34.75 26.33
Os01t0172900-00 Rice nucleus 19.0 25.76
CDY34877 Canola extracellular, golgi 31.0 25.36
CDY61868 Canola extracellular 34.5 25.14
CDY41445 Canola endoplasmic reticulum 34.75 25.0
CDY06100 Canola extracellular 25.75 24.12
GSMUA_Achr4P06370_001 Banana extracellular 37.0 19.63
Protein Annotations
Gene3D:2.160.20.10MapMan:50.3.2GO:A0A078C9F1EnsemblPlants:CDX73440ProteinID:CDX73440ProteinID:CDX73440.1
GO:GO:0003674GO:GO:0003824GO:GO:0004650GO:GO:0005975GO:GO:0008150GO:GO:0008152
GO:GO:0016787EnsemblPlantsGene:GSBRNA2T00108941001InterPro:Glyco_hydro_28InterPro:IPR012334PFAM:PF00295ScanProsite:PS00502
PANTHER:PTHR31375PANTHER:PTHR31375:SF42InterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulenceSUPFAM:SSF51126TMHMM:TMhelix
UniParc:UPI0004EE82C3:::::
Description
BnaC08g25630D
Coordinates
chrLK031799:-:373110..375890
Molecular Weight (calculated)
43552.5 Da
IEP (calculated)
4.904
GRAVY (calculated)
-0.171
Length
400 amino acids
Sequence
(BLAST)
001: MKSSYHPHIM EIIVRVVFVL TLVNFGILNG QVYDVLKFGA KGDGTTDDSE AFVEAWKAMC SSGGSNKTLL VPSDNTFLLQ PLVFQGPCNS LSVQVQLEGK
101: IVAPLNKAAW SDFKSYEWVC FNKIIGLTVR GSGTITGHGS SFWEANLPAS KRPTQLHFEG CNNLEINGIT SFDSPRNHIS IHDCRQVKIT QIKLIAPGDS
201: PNTDGIDISA STDVEIYDTI VGTGDDCVAL NSGSININIA RMRCGPGHGI SVGSLGKDGE ESTVENIQVT NCTFNETNNG ARIKTWPNGK GYARNIVFKD
301: IMLTETKNPI IINQQYIDKG RIDLEESSAV AISNVTFMDF HGTSRQDEII KIDCSEVTCC KDIVLDRIDI TTVDGNKPIA ECSNAYGNST NAYDSCLKTE
Best Arabidopsis Sequence Match ( AT5G44840.1 )
(BLAST)
001: MEIILRGVFL LTLLHSILVN GQIYDVLEFG ADGNGITDDS KAFVKAWSAM CGSGGNSKTF IIPSNKTFLL QPLTFQGPCK SPSVQVKFDG KIVAPINKAA
101: WSDYKLFRWV SFKEIIGLTV NGSGTIHGRG SSFWKQGLPA SKRPTQLHFQ RCNDLMITGI TSFNSPKNHI SISECKRVKI TKIKLVAPHD SPNTDGINIS
201: ESSDVDIYDT VIGTGDDCVA INSGSMNINI ARMNCGPGHG ISVGSVGRDG EESIVENVQV TNCTFIRTDN GARIKTWPNG KGYAKNILFK SLTFRETKNP
301: IIIDQNYVDK GRLDVEESAV AISNVTFTDL RGTSKLDEII KIDCSKVTYC KDIVLDKIDI ATVDGNKPIV ECSNVYGKSI NANEANGCFK T
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:TAIR;Acc:AT5G44840]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.