Factsheet for TraesCS2D01G402300.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G405600.1	Wheat	extracellular	90.69	94.67
TraesCS2D01G402200.1	Wheat	extracellular	81.38	69.31
TraesCS2D01G402100.1	Wheat	extracellular	80.18	65.93
HORVU2Hr1G096130.1	Barley	extracellular	78.38	64.44
TraesCS2D01G402000.1	Wheat	extracellular	74.47	57.94
KXG26899	Sorghum	extracellular	55.86	44.29
KRH14715	Soybean	cytosol, extracellular, nucleus, plastid	35.74	34.29
KRH05150	Soybean	extracellular	27.33	33.83
GSMUA_Achr11P...	Banana	extracellular	41.44	33.17
KRH23786	Soybean	cytosol, extracellular, nucleus, plastid	35.74	33.06
AT4G35670.1	Thale cress	extracellular	38.74	32.74
CDX73440	Canola	extracellular	38.44	32.0
TraesCS5D01G470100.1	Wheat	extracellular	39.34	31.95
AT5G44830.1	Thale cress	extracellular	31.83	31.93
KRG88958	Soybean	extracellular	33.93	31.83
CDY39404	Canola	extracellular	37.84	31.58
CDY50769	Canola	extracellular	32.43	31.58
Bra025099.1-P	Field mustard	extracellular	37.84	31.5
CDY69377	Canola	extracellular	37.84	31.5
AT5G44840.1	Thale cress	extracellular	36.94	31.46
VIT_09s0002g06650.t01	Wine grape	extracellular	38.14	31.44
TraesCS5D01G470200.1	Wheat	extracellular	39.34	31.26
Bra025103.1-P	Field mustard	extracellular	37.24	31.0
CDY39399	Canola	extracellular	37.24	31.0
VIT_09s0096g00850.t01	Wine grape	cytoskeleton, cytosol, peroxisome	34.53	31.0
TraesCS7D01G164200.1	Wheat	extracellular	39.04	30.95
VIT_09s0002g06610.t01	Wine grape	extracellular	36.04	30.85
CDY47032	Canola	extracellular	37.24	30.77
TraesCS3D01G130300.1	Wheat	extracellular	36.94	30.67
TraesCS3D01G130400.1	Wheat	extracellular	37.84	30.58
CDX72553	Canola	extracellular	36.94	30.52
CDX85471	Canola	extracellular	36.64	30.05
AT5G17200.1	Thale cress	extracellular	37.54	29.69
Solyc08g060970.2.1	Tomato	nucleus	35.14	29.47
VIT_09s0002g06580.t01	Wine grape	cytosol	34.53	29.41
KRH66276	Soybean	extracellular	31.23	29.3
CDY02729	Canola	extracellular	37.54	29.21
KRH23567	Soybean	extracellular	35.14	29.18
PGSC0003DMT400056828	Potato	extracellular	34.83	29.15
Bra008572.1-P	Field mustard	extracellular	37.84	29.03
TraesCS1D01G129600.2	Wheat	cytosol, extracellular, nucleus	28.23	29.01
Bra023600.1-P	Field mustard	extracellular	36.94	28.74
PGSC0003DMT400008955	Potato	extracellular	30.03	28.74
KRH66273	Soybean	extracellular	26.43	28.39
CDY16952	Canola	extracellular	36.94	28.34
TraesCS1D01G370300.3	Wheat	extracellular	34.83	28.22
TraesCS1D01G370700.1	Wheat	extracellular	35.44	28.16
TraesCS4D01G243600.1	Wheat	extracellular	36.34	27.94
AT4G32370.1	Thale cress	extracellular	28.53	27.78
KRH09740	Soybean	extracellular	35.44	27.76
Solyc03g116580.2.1	Tomato	extracellular	36.34	27.69
TraesCS1D01G066400.1	Wheat	cytosol	31.53	27.56
KRH66305	Soybean	extracellular	31.83	27.53
CDX69397	Canola	extracellular	33.33	27.48
KRH48978	Soybean	extracellular	24.32	27.18
Bra011341.1-P	Field mustard	cytosol	31.53	26.72
Bra001605.1-P	Field mustard	extracellular	35.74	26.33
CDX75843	Canola	extracellular	35.74	26.27
AT5G27530.1	Thale cress	cytosol	36.04	26.2
CDY30105	Canola	extracellular	35.14	26.06
CDX97703	Canola	extracellular	35.14	25.89
CDX75239	Canola	cytosol	31.53	25.86
CDY58462	Canola	extracellular	35.14	25.83
Bra027211.1-P	Field mustard	extracellular	34.83	25.72
CDX68839	Canola	cytosol	31.23	25.62
AT3G15720.1	Thale cress	extracellular	34.83	25.44
CDY30107	Canola	extracellular	34.83	25.44
CDX97704	Canola	extracellular	34.83	25.44
Bra027210.1-P	Field mustard	extracellular	34.53	25.22
CDY39884	Canola	extracellular	33.63	25.17
TraesCS3D01G021700.1	Wheat	extracellular	33.03	24.94
TraesCS1D01G370800.1	Wheat	extracellular	32.43	24.88
TraesCS1D01G066300.1	Wheat	extracellular, golgi	36.64	24.45
Bra040077.1-P	Field mustard	extracellular	26.43	24.11
AT4G32380.1	Thale cress	extracellular	32.13	23.62
TraesCS1D01G311000.1	Wheat	extracellular	33.03	22.96
TraesCS1D01G425600.1	Wheat	extracellular	36.04	22.77
TraesCS3D01G223900.1	Wheat	extracellular	36.64	22.76
TraesCS7D01G326800.1	Wheat	extracellular	32.43	22.13
AT4G32375.1	Thale cress	extracellular	21.92	17.26

Protein Annotations

EnsemblPlants:TraesCS2D01G402300.1	EnsemblPlantsGene:TraesCS2D01G402300	Gene3D:2.160.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31375	PANTHER:PTHR31375:SF45	PFAM:PF00295	SEG:seg
SignalP:SignalP-noTM	SUPFAM:SSF51126	MapMan:50.3.2	:	:	:

Description

No Description!

Coordinates

chr2D:+:517086192..517088180

Molecular Weight (calculated)

35589.1 Da

IEP (calculated)

9.147

GRAVY (calculated)

-0.116

Length

333 amino acids

Sequence
(BLAST)

001: MGIIGIRTAT LLLAALAWRS VLVAAAGEAD GVFNVKDYGA RGDGTTDDTK AFIDAWTAAC GARGSSASLL VPAGKSFLVG PARFSGPCTS TRITVQVMGT
101: ITAPPPGAWS GQNYWMMFYQ VQGLTVTGGS TGLLDGRGRS WWWSDKFNRY GDIYKAPTAL VVMNCTDVEL SQFSSKNSPQ MHISVSQSSK VHLTQLTTTA
201: PWDSPNTDGV HIDRSQDVRV TRSTMGTGGE CVSIGPGSRF VTVDGIVCGP GRAVSVGSLG RKGATESVEY IDVKNVQFIN TSSGATIKTW QGGKGYARSI
301: SFTDINFTNV DRPVVINQFY ADPYHVPNMG RWR

Best Arabidopsis Sequence Match ( AT3G15720.3 )
(BLAST)

001: MKKTWFLNFS LFFLQIFTSS NALDVTQFGA VGDGVTDDSQ AFLKAWEAVC SGTGDGQFVV PAGMTFMLQP LKFQGSCKST PVFVQMLGKL VAPSKGNWKG
101: DKDQWILFTD IEGLVIEGDG EINGQGSSWW EHKGSRPTAL KFRSCNNLRL SGLTHLDSPM AHIHISECNY VTISSLRINA PESSPNTDGI DVGASSNVVI
201: QDCIIATGDD CIAINSGTSN IHISGIDCGP GHGISIGSLG KDGETATVEN VCVQNCNFRG TMNGARIKTW QGGSGYARMI TFNGITLDNV ENPIIIDQFY
301: NGGDSDNAKD RKSSAVEVSK VVFSNFIGTS KSEYGVDFRC SERVPCTEIF LRDMKIETAS SGSGQVAQGQ CLNVRGASTI AVPGLECLEL STDMFSSAQL
401: LEQTCMSAQS VQPRTTTQPM QDPIWVFQSR GKQLRVYNIA ILVSFISLVT YILAR

Arabidopsis Description

Probable polygalacturonase At3g15720 [Source:UniProtKB/Swiss-Prot;Acc:Q9LW07]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.