Factsheet for TraesCS1D01G066400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G083700.1	Wheat	extracellular	70.34	88.74
HORVU1Hr1G013520.1	Barley	cytosol	80.84	78.37
TraesCS1D01G066300.1	Wheat	extracellular, golgi	94.75	72.34
TraesCS1D01G129600.2	Wheat	cytosol, extracellular, nucleus	41.73	49.07
TraesCS7D01G164200.1	Wheat	extracellular	51.97	47.14
TraesCS5D01G470100.1	Wheat	extracellular	48.82	45.37
TraesCS5D01G470200.1	Wheat	extracellular	48.82	44.39
TraesCS1D01G370300.3	Wheat	extracellular	39.63	36.74
TraesCS4D01G243600.1	Wheat	extracellular	41.47	36.49
TraesCS2D01G402100.1	Wheat	extracellular	36.22	34.07
TraesCS3D01G130300.1	Wheat	extracellular	35.7	33.92
TraesCS2D01G402200.1	Wheat	extracellular	33.86	32.99
TraesCS3D01G130400.1	Wheat	extracellular	34.38	31.8
TraesCS2D01G402300.1	Wheat	extracellular	27.56	31.53
TraesCS2D01G402000.1	Wheat	extracellular	35.17	31.31
TraesCS7D01G326800.1	Wheat	extracellular	36.22	28.28
TraesCS1D01G311000.1	Wheat	extracellular	35.17	27.97
TraesCS1D01G370700.1	Wheat	extracellular	30.71	27.92
TraesCS1D01G370800.1	Wheat	extracellular	30.71	26.96
TraesCS3D01G021700.1	Wheat	extracellular	30.71	26.53
TraesCS3D01G223900.1	Wheat	extracellular	35.7	25.37
TraesCS1D01G425600.1	Wheat	extracellular	33.6	24.29

Protein Annotations

EnsemblPlants:TraesCS1D01G066400.1	EnsemblPlantsGene:TraesCS1D01G066400	Gene3D:2.160.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31375	PANTHER:PTHR31375:SF39	PFAM:PF00295
ScanProsite:PS00502	SEG:seg	SMART:SM00710	SUPFAM:SSF51126	MapMan:50.3.2	:

Description

No Description!

Coordinates

chr1D:-:47934766..47936019

Molecular Weight (calculated)

41839.2 Da

IEP (calculated)

6.370

GRAVY (calculated)

-0.538

Length

381 amino acids

Sequence
(BLAST)

001: MPDQSIKLDL RSYHRAPAAG RHRKLLEPSP GPSPAPSPEP SQSENDVEVD VASYGAVGDG QQDDTPAFRE AWAAACASPQ PATLVVPREK TYLVKHRSAW
101: PEENMRWWIM FRNVDGLTVT GDGTIDGNGE TWWKSSCRVD KKLKLLLSRC NNLTVENIQL LNSQQIHMSV EDCRDVLLKG ITITAPGDSP MNDGIHIART
201: KDIQVLDCDI KTGDDCMSIE TGTENLYASR ITCGPGHGIS IGSLGDDNSE ARVSNVTVYK AHLSGTTNGV RMKSWQGGKG YATDVTFEDI TMEDVHNPII
301: IDQNYCTSPK SCKKQTSAVE FSNIRFKDIR GTSATKEAIK LDCSDTVPCR DILLQDVKLT FHDRGHKHKH ASATSVCNNP S

Best Arabidopsis Sequence Match ( AT1G70500.1 )
(BLAST)

001: MIKPFIISLF ALLMVASYGA TGKMLFKELD ILGKLENLDV PEDDIEDDVT FFDFSSFTSQ YSGKNLVNVD SFNASGDGVS DDTQAFIRAW TMACSAPNSV
101: LLVPQGRSYL VNATKFDGPC QEKLIIQIDG TIIAPDEPSQ WDPKFPRNWL QFSKLQGVVF QGNGVIDGSG TKWWAASCKK NKSNPCVGAP TALTIYSSSN
201: VYVRGLTIRN SQQMHLIIQR STTVRISRVM VTSPGDSPNT DGIHITASTD VVVQDSKIST GDDCVSIVNG SAKIKMKRIY CGPGHGISIG SLGQGHSKGT
301: VTAVVLETAF LKNTTNGLRI KTWQGGNGYV KGVRFENVVM QDVANPIIID QFYCDSPSTC QNQTSAVHIS EIMYRNITGT TKSSKAINFK CSDAVPCSHI
401: VLNNINLEGN DGKVEAYCNS AEGFGYGVVH PSADCLYSHD DKSLNQTDQY LAETIMVEKE TENAHDEL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9CAL5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.