Factsheet for TraesCS2D01G402200.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G423400.1	Wheat	plastid	85.17	94.87
HORVU2Hr1G096130.1	Barley	extracellular	86.19	83.21
TraesCS2D01G402100.1	Wheat	extracellular	84.91	81.98
TraesCS2D01G402300.1	Wheat	extracellular	69.31	81.38
TraesCS2D01G402000.1	Wheat	extracellular	80.31	73.36
KXG26899	Sorghum	extracellular	61.13	56.9
KRH14715	Soybean	cytosol, extracellular, nucleus, plastid	37.08	41.79
KRH23786	Soybean	cytosol, extracellular, nucleus, plastid	37.85	41.11
GSMUA_Achr11P...	Banana	extracellular	42.71	40.14
AT5G44830.1	Thale cress	extracellular	33.76	39.76
CDY50769	Canola	extracellular	34.53	39.47
AT4G35670.1	Thale cress	extracellular	39.13	38.83
VIT_09s0002g06650.t01	Wine grape	extracellular	39.9	38.61
VIT_09s0096g00850.t01	Wine grape	cytoskeleton, cytosol, peroxisome	36.57	38.54
TraesCS5D01G470100.1	Wheat	extracellular	40.41	38.54
KRG88958	Soybean	extracellular	34.78	38.31
VIT_09s0002g06610.t01	Wine grape	extracellular	38.11	38.3
CDY69377	Canola	extracellular	38.87	38.0
CDX73440	Canola	extracellular	38.87	38.0
TraesCS1D01G129600.2	Wheat	cytosol, extracellular, nucleus	31.2	37.65
AT5G44840.1	Thale cress	extracellular	37.6	37.6
CDY39404	Canola	extracellular	38.36	37.59
Bra025099.1-P	Field mustard	extracellular	38.36	37.5
TraesCS3D01G130300.1	Wheat	extracellular	38.36	37.41
Bra025103.1-P	Field mustard	extracellular	38.11	37.25
TraesCS5D01G470200.1	Wheat	extracellular	39.9	37.23
KRH66276	Soybean	extracellular	33.76	37.18
KRH66273	Soybean	extracellular	29.41	37.1
CDY39399	Canola	extracellular	37.85	37.0
KRH48978	Soybean	extracellular	28.13	36.91
TraesCS7D01G164200.1	Wheat	extracellular	39.64	36.9
VIT_09s0002g06580.t01	Wine grape	cytosol	36.83	36.83
CDY47032	Canola	extracellular	37.08	35.98
TraesCS3D01G130400.1	Wheat	extracellular	37.85	35.92
KRH23567	Soybean	extracellular	36.83	35.91
CDX72553	Canola	extracellular	36.83	35.73
KRH05150	Soybean	extracellular	24.3	35.32
Solyc08g060970.2.1	Tomato	nucleus	35.81	35.26
TraesCS4D01G243600.1	Wheat	extracellular	38.62	34.87
TraesCS1D01G370300.3	Wheat	extracellular	36.57	34.79
Solyc03g116580.2.1	Tomato	extracellular	38.87	34.78
PGSC0003DMT400008955	Potato	extracellular	30.95	34.77
CDX85471	Canola	extracellular	36.06	34.73
PGSC0003DMT400056828	Potato	extracellular	35.29	34.67
KRH09740	Soybean	extracellular	37.34	34.35
Bra008572.1-P	Field mustard	extracellular	37.6	33.87
TraesCS1D01G066400.1	Wheat	cytosol	32.99	33.86
AT5G17200.1	Thale cress	extracellular	36.32	33.73
CDY16952	Canola	extracellular	37.34	33.64
Bra011341.1-P	Field mustard	cytosol	33.76	33.59
TraesCS1D01G370700.1	Wheat	extracellular	35.81	33.41
CDY02729	Canola	extracellular	36.57	33.41
KRH66305	Soybean	extracellular	32.74	33.25
Bra023600.1-P	Field mustard	extracellular	36.32	33.18
CDX69397	Canola	extracellular	34.02	32.92
CDX75239	Canola	cytosol	33.76	32.51
CDX68839	Canola	cytosol	33.76	32.51
Bra001605.1-P	Field mustard	extracellular	37.08	32.08
CDX75843	Canola	extracellular	37.08	32.01
CDY30105	Canola	extracellular	36.57	31.85
CDY58462	Canola	extracellular	36.83	31.79
Bra027211.1-P	Field mustard	extracellular	36.32	31.49
CDX97703	Canola	extracellular	36.32	31.42
CDY30107	Canola	extracellular	36.57	31.36
CDX97704	Canola	extracellular	36.57	31.36
Bra027210.1-P	Field mustard	extracellular	36.32	31.14
TraesCS1D01G370800.1	Wheat	extracellular	34.53	31.11
TraesCS1D01G066300.1	Wheat	extracellular, golgi	39.64	31.06
AT4G32370.1	Thale cress	extracellular	27.11	30.99
AT3G15720.1	Thale cress	extracellular	35.81	30.7
TraesCS3D01G021700.1	Wheat	extracellular	34.27	30.39
AT5G27530.1	Thale cress	cytosol	35.29	30.13
TraesCS1D01G311000.1	Wheat	extracellular	36.57	29.85
CDY39884	Canola	extracellular	33.25	29.21
Bra040077.1-P	Field mustard	extracellular	26.6	28.49
AT4G32380.1	Thale cress	extracellular	32.48	28.04
TraesCS7D01G326800.1	Wheat	extracellular	34.78	27.87
TraesCS1D01G425600.1	Wheat	extracellular	37.08	27.51
TraesCS3D01G223900.1	Wheat	extracellular	37.34	27.24
AT4G32375.1	Thale cress	extracellular	25.06	23.17

Protein Annotations

EnsemblPlants:TraesCS2D01G402200.1	EnsemblPlantsGene:TraesCS2D01G402200	Gene3D:2.160.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31375	PANTHER:PTHR31375:SF45	PFAM:PF00295	ScanProsite:PS00502
SEG:seg	SUPFAM:SSF51126	TMHMM:TMhelix	MapMan:50.3.2	:	:

Description

No Description!

Coordinates

chr2D:+:517037413..517046181

Molecular Weight (calculated)

41588.4 Da

IEP (calculated)

8.535

GRAVY (calculated)

-0.049

Length

391 amino acids

Sequence
(BLAST)

001: MGIISIRTGT LLLAGLAWCG VLVAAAGVFN VKDYAARGHG TTDDTKAFMD AWTAACGARG WSATLLVPAA KSFLVGPTRF SGPCASSRIT VQVMGTITAP
101: PARPWSEKNY WLMFYQVHGL TVTGGSTGLL DGRGGTWWGD KCKRHAALVV MNCADVELSQ FSSKNSPQMH IAVCQSSKVH LTQLTITAPW DSPNTDGVHV
201: DRSQDVRVTR STIGTGDDCV SIGPGSRFVT VDGIVCGPGH GVSVGSLGRK GATESVEYID VKNVQFINTA NGARIKTWQG GKGYAKSISF TDIKFTNVDH
301: PVVINQFYVD RHDVPNMGAV ALSNITYTNL KGTSRYKTAV EFDCSESGSC TNIHVNSVAI TAAYGGETVA RCQNAQGDTS GYVYPKIPCL R

Best Arabidopsis Sequence Match ( AT4G35670.1 )
(BLAST)

001: MKTILDISIL INFLCFGIVY GKNYNVLNFD AKGDGQTDDS EAFLQAWTAA CGGDGDIKTL LIPSGKTFLL QPTVFQGPCK SSSIKVQLDG TIVAPSDKFA
101: WSDPISRMWI KFSTVSGLII VGSGTIDSRG SSFWELNLKA SQRPTALHIS KCDNLRINGI TSIDSPKNHI SIKTCNTVAI SNINLFAPET SPNTDGIDIS
201: DSTNINIFDS TIQTGDDCIA INSGSSNINI TGINCGPGHG ISVGSLGAGG AEAKVSDVQV THCTFNQTTN GARIKTWLGG QGYARNISFT DITLVNTKNP
301: IIIDQHYIDK GRLTEESAVA ISNVKFVDFR GTSSNKNAIT LKCSETTHCV DVVMDGIDIT MANGGKPKVN CQYVDGESSD TDLMRDCFKN NTSS

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JN47]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.