Factsheet for TraesCS1D01G066300.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	nucleus, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G083700.1	Wheat	extracellular	58.32	96.36
TraesCS1D01G066400.1	Wheat	cytosol	72.34	94.75
HORVU1Hr1G013520.1	Barley	cytosol	69.94	88.8
TraesCS1D01G129600.2	Wheat	cytosol, extracellular, nucleus	37.07	57.1
TraesCS7D01G164200.1	Wheat	extracellular	46.69	55.48
TraesCS5D01G470100.1	Wheat	extracellular	44.49	54.15
TraesCS5D01G470200.1	Wheat	extracellular	44.69	53.22
TraesCS4D01G243600.1	Wheat	extracellular	36.27	41.8
TraesCS1D01G370300.3	Wheat	extracellular	34.07	41.36
TraesCS2D01G402100.1	Wheat	extracellular	33.27	40.99
TraesCS2D01G402200.1	Wheat	extracellular	31.06	39.64
TraesCS3D01G130300.1	Wheat	extracellular	31.26	38.9
TraesCS2D01G402000.1	Wheat	extracellular	32.06	37.38
TraesCS3D01G130400.1	Wheat	extracellular	30.86	37.38
TraesCS2D01G402300.1	Wheat	extracellular	24.45	36.64
TraesCS7D01G326800.1	Wheat	extracellular	32.26	32.99
TraesCS1D01G311000.1	Wheat	extracellular	31.46	32.78
TraesCS1D01G370700.1	Wheat	extracellular	27.45	32.7
TraesCS1D01G370800.1	Wheat	extracellular	27.25	31.34
TraesCS3D01G021700.1	Wheat	extracellular	27.45	31.07
TraesCS3D01G223900.1	Wheat	extracellular	31.46	29.29
TraesCS1D01G425600.1	Wheat	extracellular	30.26	28.65

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334	PFAM:PF00295
ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF39	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence
SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-TM	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS1D01G066300	EnsemblPlants:TraesCS1D01G066300.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:47882148..47883647

Molecular Weight (calculated)

54219.6 Da

IEP (calculated)

8.174

GRAVY (calculated)

-0.390

Length

499 amino acids

Sequence
(BLAST)

001: MSSSFRRRAL VVLATVLILV LLLLLLVPAI AHADSIAAAG GGRRTTSNNV RPNLRRKKIM PDQTIELDLR GYHRAAAAGR HRKLLEPSPG PSPAPSPEPP
101: PAPSPEPSQS ENAVEVEVDV ASYGAVGDGQ QDDTPAFREA WAAACASPQP ATLVVPREKT YLMKQTTFSG KCKSPVTFRL DGTLVAPASR SAWPEENMRW
201: WIMFRNVDGL TVTGDGTIDG NGETWWKSSC RVDKKLKCSN APMALLLSRC NNLTVENIRL LNSQQIHMSV EDCRDVLLKG ITITAPGDSP MNDGIHIART
301: KDIQVLDCDI KTGDDCMSIE TGTENLYASR ITCGPGHGIS IGSLGNDNSE ARVSNITIYK AHLSGTTNGA RMKSWQGGKG YAKDVTFEDI TMEEVHNPII
401: IDQNYCTSAD PANPKPCKKQ TSAVEFSNIR FKNIRGTSAT KEAIKLDCSD TVPCRDILLQ DVKLTFRDRG HKHKHTSATS VCNNAKLTES GTNVDPKTC

Best Arabidopsis Sequence Match ( AT1G70500.1 )
(BLAST)

001: MIKPFIISLF ALLMVASYGA TGKMLFKELD ILGKLENLDV PEDDIEDDVT FFDFSSFTSQ YSGKNLVNVD SFNASGDGVS DDTQAFIRAW TMACSAPNSV
101: LLVPQGRSYL VNATKFDGPC QEKLIIQIDG TIIAPDEPSQ WDPKFPRNWL QFSKLQGVVF QGNGVIDGSG TKWWAASCKK NKSNPCVGAP TALTIYSSSN
201: VYVRGLTIRN SQQMHLIIQR STTVRISRVM VTSPGDSPNT DGIHITASTD VVVQDSKIST GDDCVSIVNG SAKIKMKRIY CGPGHGISIG SLGQGHSKGT
301: VTAVVLETAF LKNTTNGLRI KTWQGGNGYV KGVRFENVVM QDVANPIIID QFYCDSPSTC QNQTSAVHIS EIMYRNITGT TKSSKAINFK CSDAVPCSHI
401: VLNNINLEGN DGKVEAYCNS AEGFGYGVVH PSADCLYSHD DKSLNQTDQY LAETIMVEKE TENAHDEL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9CAL5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.