Factsheet for TraesCS1D01G370300.3

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G364800.2	Wheat	extracellular	95.86	95.17
TraesCS1B01G382200.2	Wheat	extracellular	95.13	94.44
EES18597	Sorghum	extracellular	78.59	79.17
Zm00001d038874_P002	Maize	extracellular	76.89	76.7
Os05t0542800-02	Rice	extracellular	79.08	76.29
TraesCS1D01G370700.1	Wheat	extracellular	53.77	52.74
TraesCS1D01G370800.1	Wheat	extracellular	51.34	48.62
TraesCS3D01G021700.1	Wheat	extracellular	50.61	47.17
TraesCS1D01G129600.2	Wheat	cytosol, extracellular, nucleus	34.06	43.21
VIT_09s0002g06380.t01	Wine grape	cytosol	42.58	42.27
GSMUA_Achr3P13670_001	Banana	extracellular	46.72	42.2
KRH09752	Soybean	extracellular	46.47	41.7
Solyc06g068040.2.1	Tomato	nucleus	44.04	41.42
CDY54312	Canola	extracellular	44.28	40.99
CDY57689	Canola	extracellular	44.28	40.72
Solyc03g116500.2.1	Tomato	nucleus	44.77	40.71
TraesCS5D01G470100.1	Wheat	extracellular	40.39	40.49
AT1G80170.1	Thale cress	extracellular	43.55	40.32
PGSC0003DMT400001638	Potato	extracellular, plastid	44.04	40.31
Bra003555.1-P	Field mustard	extracellular	43.8	40.27
TraesCS7D01G164200.1	Wheat	extracellular	41.12	40.24
TraesCS1D01G066400.1	Wheat	cytosol	36.74	39.63
TraesCS5D01G470200.1	Wheat	extracellular	40.15	39.38
TraesCS2D01G402200.1	Wheat	extracellular	34.79	36.57
TraesCS2D01G402100.1	Wheat	extracellular	35.77	36.3
TraesCS4D01G243600.1	Wheat	extracellular	37.47	35.57
TraesCS2D01G402300.1	Wheat	extracellular	28.22	34.83
TraesCS3D01G130300.1	Wheat	extracellular	33.82	34.66
TraesCS1D01G066300.1	Wheat	extracellular, golgi	41.36	34.07
TraesCS2D01G402000.1	Wheat	extracellular	34.79	33.41
TraesCS3D01G130400.1	Wheat	extracellular	33.33	33.25
TraesCS1D01G311000.1	Wheat	extracellular	37.71	32.36
TraesCS7D01G326800.1	Wheat	extracellular	38.2	32.17
TraesCS1D01G425600.1	Wheat	extracellular	36.74	28.65
TraesCS3D01G223900.1	Wheat	extracellular	36.98	28.36

Protein Annotations

EnsemblPlants:TraesCS1D01G370300.3	EnsemblPlantsGene:TraesCS1D01G370300	Gene3D:2.160.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31375	PANTHER:PTHR31375:SF4	PFAM:PF00295	ScanProsite:PS00502
SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF51126	TMHMM:TMhelix	MapMan:50.3.2	:

Description

No Description!

Coordinates

chr1D:+:448786768..448789045

Molecular Weight (calculated)

43466.0 Da

IEP (calculated)

7.829

GRAVY (calculated)

0.012

Length

411 amino acids

Sequence
(BLAST)

001: MVRTPAASVL RVLVALVGAA VVCFSGAAEA RVLLTLDDFG AVGDGIANDT QAFVDAWTAA CGSEEQAVLA VPVAKAYRIW PVQLAGPCKK KLKLLIAGTI
101: VAPASPDEWA GRDPMKWLYI YGVDGLSVSG GGTIDGVGQE WWARSCKRKK TQPCNTRPPP RALHFEECRG VSVQGVTLQN GPQFHLSFTR CVDVKASFLR
201: LVAPAESPNT DGIHLNDSSR VQITDNLIST GDDCVSMVGN CSDVRVRDIS CGPGHGISIG SLGKNRTADR VENVRVDICL LTNTTNGVRI KSWQGGMGSA
301: RDLRFESIVM KNVSNPIIID QYYCDQPTPC ANQTEAVEVR KVEFVDVRGT SATARAIKIA CSDTAPCTEL ELRNVNLTVV GGGAATASCY RASGKAAGVV
401: APASCLAKGD P

Best Arabidopsis Sequence Match ( AT1G80170.1 )
(BLAST)

001: MSYSRGGTLV TLLLLLVVAS SLALTANANS FESLLQLPRR QSRSTRPRSE RLLHVGNFGA KGNGVTDDTK AFADAWKTAC SSKVKTRILV PENYTCLLRP
101: IDLSGPCKAR LTLQISGTII APNDPDVWEG LNRRKWLYFH GLSRLTVEGG GTVNGMGQEW WERSCKHNHS NPCRGAPTAL TFHKCKNMRV ENLNVIDSQQ
201: MHIALTSCRR VTISGLKVIA PATSPNTDGI HISVSRGIVI DNTTVSTGDD CISIVKNSTQ ISISNIICGP GHGISIGSLG KSKSWEEVRD ITVDTAIISD
301: TANGVRIKTW QGGSGLVSKI IFRNIKMNNV SNPIIIDQYY CDSRKPCANQ TSAISIENIS FVHVRGTSAS KEAIKISCSD SSPCRNILLQ DIDLEPSNGD
401: GFTESFCWEA YGSSSGQVYP PPCLSDDTSF LEQSVQSGIT SAYL

Arabidopsis Description

Probable polygalacturonase At1g80170 [Source:UniProtKB/Swiss-Prot;Acc:Q94AJ5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.