Factsheet for TraesCS3D01G130300.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, nucleus, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G148500.1	Wheat	extracellular	95.26	95.26
TraesCS3A01G129400.1	Wheat	extracellular	93.02	90.98
TraesCS3D01G130400.1	Wheat	extracellular	78.3	76.21
KXG31745	Sorghum	extracellular	58.35	54.29
Zm00001d039668_P001	Maize	plastid	58.6	53.78
Os01t0172900-00	Rice	nucleus	34.91	47.46
GSMUA_AchrUn_...	Banana	extracellular	30.92	43.06
TraesCS2D01G402100.1	Wheat	extracellular	39.65	39.26
TraesCS1D01G129600.2	Wheat	cytosol, extracellular, nucleus	31.67	39.2
TraesCS2D01G402200.1	Wheat	extracellular	37.41	38.36
GSMUA_AchrUn_...	Banana	mitochondrion	38.65	38.08
TraesCS2D01G402300.1	Wheat	extracellular	30.67	36.94
TraesCS5D01G470100.1	Wheat	extracellular	37.41	36.59
TraesCS5D01G470200.1	Wheat	extracellular	38.15	36.52
TraesCS7D01G164200.1	Wheat	extracellular	37.41	35.71
TraesCS1D01G066400.1	Wheat	cytosol	33.92	35.7
TraesCS2D01G402000.1	Wheat	extracellular	36.91	34.58
TraesCS1D01G370300.3	Wheat	extracellular	34.66	33.82
TraesCS4D01G243600.1	Wheat	extracellular	34.66	32.1
TraesCS1D01G066300.1	Wheat	extracellular, golgi	38.9	31.26
TraesCS1D01G370700.1	Wheat	extracellular	31.42	30.07
TraesCS1D01G311000.1	Wheat	extracellular	35.16	29.44
TraesCS1D01G425600.1	Wheat	extracellular	37.16	28.27
TraesCS7D01G326800.1	Wheat	extracellular	33.67	27.66
TraesCS1D01G370800.1	Wheat	extracellular	29.68	27.42
TraesCS3D01G021700.1	Wheat	extracellular	29.43	26.76
TraesCS3D01G223900.1	Wheat	extracellular	35.16	26.31

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334	PFAM:PF00295
ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF97	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence
SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS3D01G130300	EnsemblPlants:TraesCS3D01G130300.1	SEG:seg

Description

No Description!

Coordinates

chr3D:-:90372908..90375166

Molecular Weight (calculated)

43163.4 Da

IEP (calculated)

8.092

GRAVY (calculated)

-0.148

Length

401 amino acids

Sequence
(BLAST)

001: MRAVLPMLLL LVASAAVGSA AAAGRRKGEG TRYSVMAFHA AGDGETDDSK AFEETWDSAC RDSGGATLYV PEGRTFLLGE TKLQGPCKSP ITLQVDGDIV
101: APSSLWTLKS LTSLLAFYRV DNLTVDGIGQ IDGRGAPWWH CYNQKKCHYR PQLVSFSFCN GLRVTNIRLK DSADKHMSVF ECSQVQVHNV TVMAPGNSPN
201: TDGITMGASD HVRISSCNIH SGDDCVSILT GTTDVNVTDV TCGPGHGISV GSLGGASEKP ALVERITVSN CNFFNTMTGV RIKSWQGGRG KANTFLFRDL
301: NMTQVRYPID IDQFYCPQGN CPKREGGVAI TDARFINIRG TSSEQEAIQI LCSKSVPCHG IFLHNVDLSW ANHTAPTKAK ILNAQGSVAG TVKPQVRFRG
401: L

Best Arabidopsis Sequence Match ( AT1G80170.1 )
(BLAST)

001: MSYSRGGTLV TLLLLLVVAS SLALTANANS FESLLQLPRR QSRSTRPRSE RLLHVGNFGA KGNGVTDDTK AFADAWKTAC SSKVKTRILV PENYTCLLRP
101: IDLSGPCKAR LTLQISGTII APNDPDVWEG LNRRKWLYFH GLSRLTVEGG GTVNGMGQEW WERSCKHNHS NPCRGAPTAL TFHKCKNMRV ENLNVIDSQQ
201: MHIALTSCRR VTISGLKVIA PATSPNTDGI HISVSRGIVI DNTTVSTGDD CISIVKNSTQ ISISNIICGP GHGISIGSLG KSKSWEEVRD ITVDTAIISD
301: TANGVRIKTW QGGSGLVSKI IFRNIKMNNV SNPIIIDQYY CDSRKPCANQ TSAISIENIS FVHVRGTSAS KEAIKISCSD SSPCRNILLQ DIDLEPSNGD
401: GFTESFCWEA YGSSSGQVYP PPCLSDDTSF LEQSVQSGIT SAYL

Arabidopsis Description

Probable polygalacturonase At1g80170 [Source:UniProtKB/Swiss-Prot;Acc:Q94AJ5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.