Factsheet for Os01t0172900-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
vacuole 1
cytosol 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG31745	Sorghum	extracellular	53.22	36.43
Zm00001d039668_P001	Maize	plastid	52.2	35.24
TraesCS3D01G130300.1	Wheat	extracellular	47.46	34.91
TraesCS3B01G148500.1	Wheat	extracellular	46.78	34.41
TraesCS3A01G129400.1	Wheat	extracellular	47.46	34.15
TraesCS3A01G129500.1	Wheat	extracellular	45.08	32.68
TraesCS3D01G130400.1	Wheat	extracellular	45.42	32.52
TraesCS3B01G148600.1	Wheat	extracellular	45.42	32.52
HORVU3Hr1G024420.1	Barley	cytosol	24.41	32.29
PGSC0003DMT400008955	Potato	extracellular	29.15	24.71
VIT_09s0002g06580.t01	Wine grape	cytosol	30.17	22.76
VIT_09s0002g06650.t01	Wine grape	extracellular	30.85	22.52
Solyc03g116580.2.1	Tomato	extracellular	33.22	22.43
VIT_17s0000g05670.t01	Wine grape	extracellular	29.83	22.39
VIT_09s0096g00850.t01	Wine grape	cytoskeleton, cytosol, peroxisome	28.14	22.37
Solyc03g113230.1.1	Tomato	extracellular	30.85	22.14
KRH14715	Soybean	cytosol, extracellular, nucleus, plastid	25.76	21.9
KRH23786	Soybean	cytosol, extracellular, nucleus, plastid	26.44	21.67
Solyc08g060970.2.1	Tomato	nucleus	29.15	21.66
PGSC0003DMT400056828	Potato	extracellular	29.15	21.61
VIT_09s0002g06610.t01	Wine grape	extracellular	28.47	21.59
CDY47032	Canola	extracellular	29.15	21.34
AT4G35670.1	Thale cress	extracellular	28.47	21.32
KRH23567	Soybean	extracellular	28.81	21.2
VIT_17s0000g05660.t01	Wine grape	extracellular	27.8	21.19
GSMUA_AchrUn_...	Banana	extracellular	20.68	21.18
CDY56952	Canola	extracellular	30.17	21.14
KRG88958	Soybean	extracellular	25.42	21.13
CDX72553	Canola	extracellular	28.81	21.09
Bra025631.1-P	Field mustard	extracellular	30.17	21.09
Os05t0542800-02	Rice	extracellular	30.17	20.89
GSMUA_AchrUn_...	Banana	mitochondrion	28.81	20.88
CDX74418	Canola	extracellular	29.83	20.85
KRH66276	Soybean	extracellular	25.08	20.85
KRH09740	Soybean	extracellular	29.83	20.71
CDY39404	Canola	extracellular	27.46	20.3
CDY69377	Canola	extracellular	27.46	20.25
Bra025099.1-P	Field mustard	extracellular	27.46	20.25
AT5G17200.1	Thale cress	extracellular	28.81	20.19
Solyc12g009420.1.1	Tomato	extracellular	27.8	20.15
AT5G44840.1	Thale cress	extracellular	26.1	19.69
CDY37571	Canola	cytosol	24.75	19.52
CDY39399	Canola	extracellular	26.44	19.5
Bra008493.1-P	Field mustard	extracellular	25.76	19.49
CDX85471	Canola	extracellular	26.78	19.46
AT5G27530.1	Thale cress	cytosol	30.17	19.43
KRH66273	Soybean	extracellular	20.34	19.35
AT5G39910.1	Thale cress	extracellular	24.41	19.3
Bra025103.1-P	Field mustard	extracellular	26.1	19.25
CDX73440	Canola	extracellular	25.76	19.0
KRH66305	Soybean	extracellular	24.75	18.96
Os03t0216800-01	Rice	extracellular	28.14	18.95
KRH48978	Soybean	extracellular	18.98	18.79
AT1G80140.1	Thale cress	extracellular	21.36	18.75
CDY38648	Canola	cytosol	23.73	18.72
Bra023600.1-P	Field mustard	extracellular	27.12	18.69
CDY02729	Canola	extracellular	27.12	18.69
AT5G44830.1	Thale cress	extracellular	21.02	18.67
CDY16952	Canola	extracellular	26.78	18.2
AT3G15720.1	Thale cress	extracellular	28.14	18.2
Bra001605.1-P	Field mustard	extracellular	27.8	18.14
CDY50769	Canola	extracellular	21.02	18.13
CDY58462	Canola	extracellular	27.8	18.1
Bra027210.1-P	Field mustard	extracellular	27.8	17.98
CDX75843	Canola	extracellular	27.46	17.88
CDX97704	Canola	extracellular	27.46	17.76
Bra011341.1-P	Field mustard	cytosol	23.39	17.56
CDY30107	Canola	extracellular	27.12	17.54
CDX97703	Canola	extracellular	26.78	17.48
CDY30105	Canola	extracellular	26.44	17.37
Os05t0542900-01	Rice	extracellular	26.1	17.3
Bra008572.1-P	Field mustard	extracellular	25.42	17.28
Os03t0808000-00	Rice	extracellular	26.78	17.1
Bra027211.1-P	Field mustard	extracellular	26.1	17.07
CDX68839	Canola	cytosol	23.39	17.0
CDX75239	Canola	cytosol	23.39	17.0
Os02t0130200-01	Rice	extracellular, golgi	28.14	16.34
Os01t0637500-00	Rice	cytosol, extracellular	18.64	16.27
Os01t0636500-01	Rice	extracellular	29.49	16.17
CDX69397	Canola	extracellular	21.69	15.84
KRH05150	Soybean	extracellular	13.9	15.24
CDY39884	Canola	extracellular	22.37	14.83
Bra040077.1-P	Field mustard	extracellular	18.31	14.79
Os05t0279900-00	Rice	cytosol	15.25	14.29
AT4G32370.1	Thale cress	extracellular	16.27	14.04
Os05t0578600-01	Rice	cytosol, extracellular	14.58	13.78
AT4G32380.1	Thale cress	extracellular	21.02	13.69
Os01t0296200-00	Rice	extracellular	12.2	13.53
Os01t0549000-00	Rice	extracellular	10.17	10.56
Os01t0329300-01	Rice	plastid	24.75	9.62
AT4G32375.1	Thale cress	extracellular	13.56	9.46

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	UniProt:A0A0P0UYP2	ProteinID:BAS70642.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28
InterPro:IPR012334	EnsemblPlantsGene:Os01g0172900	EnsemblPlants:Os01t0172900-00	PFAM:PF00295	PANTHER:PTHR31375	PANTHER:PTHR31375:SF97
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	UniParc:UPI000393AD9B	SEG:seg	:

Description

POLYGALACTURONASEGlycoside hydrolase, family 28 domain containing protein. (Os01t0172900-00)

Coordinates

chr1:+:3737752..3740685

Molecular Weight (calculated)

31936.4 Da

IEP (calculated)

4.347

GRAVY (calculated)

-0.260

Length

295 amino acids

Sequence
(BLAST)

001: MVQVAGDEEE DDDNGPDQHQ DSCLVSSSHS HSSLANYGSK SPETRKKMAT IPEGGSLIME GDIPAQKRPL YNVLDFNATG DGNTDDTKAF LAAWEETCNN
101: EGWPILIIPG GRTFLLKQIK FNGSCKSPIK IQMDGNIVAP NYIWASEADN LITFYSVNNL TLDGNGQIDG KGAIWWTCYT EKGGMGQATG FIFENINMTA
201: VESPIIIDQF YCPQGNCPLK DGGVAISDAR FINIRGTSSE QEAIKILCSQ SVHCQGIYLS NINLSWENHT ALANATILNA NGTVEGSVVP KVVFS

Best Arabidopsis Sequence Match ( AT5G17200.1 )
(BLAST)

001: MKSSLFFVLL CLFQINKLCF CLEEESLKVK NGFGSNGFIS VTSFGAIGDG KTDDTKAFLK AWEAVCKGGH NRKILVPQGK TFMLKPLTFI GPCKSSTISL
101: SIRGNLVAPG YTWYAGRYTT WISFDSINGL VVTGGGTIDG RGSLWWGNVN NRPCAMHFNN CNGLRISNLR HLNSPRNHVG LSCSQNIEVR GLRMTAPGDS
201: PNTDGIDISN CIGVHIHDSV IATGDDCIAI NSGSSHINIT GIFCGPGHGI SVGSLGVTGD FETVEEVRVK NCTFTKTQNG VRIKTYQNGS GYARKISFED
301: INMVASENPI IIDQTYHNGG TNGGISKSSS SYQNCHLTAK QRTPSGNGKG VKVTDVRYAR IRGSSASDQD ITLNCDADLG CSDIVMDNVN MVSATFGHKL
401: FSSCKNAHGS LFASKVDCLK H

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FFI9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.