Factsheet for Solyc12g009420.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
golgi 5
plasma membrane 6
endoplasmic reticulum 5
vacuole 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G80140.1	Thale cress	extracellular	36.85	44.64
CDY37571	Canola	cytosol	39.56	43.05
CDY38648	Canola	cytosol	39.56	43.05
Solyc04g015530.1.1	Tomato	cytosol	40.29	41.84
Solyc08g060970.2.1	Tomato	nucleus	39.8	40.81
Bra008493.1-P	Field mustard	extracellular	38.82	40.51
Solyc03g113230.1.1	Tomato	extracellular	38.57	38.2
Solyc03g116580.2.1	Tomato	extracellular	40.05	37.3
Solyc10g080210.1.1	Tomato	extracellular	41.77	37.2
Solyc06g068040.2.1	Tomato	nucleus	39.8	37.07
Solyc09g098270.2.1	Tomato	cytosol	38.57	36.26
Solyc01g087280.1.1	Tomato	extracellular	37.35	35.76
Solyc03g116500.2.1	Tomato	nucleus	39.07	35.18
Solyc07g015870.2.1	Tomato	extracellular	38.57	34.97
Solyc01g100980.2.1	Tomato	extracellular	39.8	34.03
Solyc04g025440.2.1	Tomato	extracellular	38.33	33.91
Zm00001d039668_P001	Maize	plastid	36.36	33.87
Solyc05g005040.2.1	Tomato	extracellular	38.08	32.91
Solyc01g079130.1.1	Tomato	extracellular	36.36	31.36
Solyc05g005170.2.1	Tomato	nucleus	39.07	31.3
Solyc04g008230.2.1	Tomato	nucleus	37.1	30.82
Os01t0172900-00	Rice	nucleus	20.15	27.8

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:K4DC30
PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF97	InterPro:PbH1	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc12g009420.1	EnsemblPlants:Solyc12g009420.1.1
UniParc:UPI000276984A	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:-:2697739..2702193

Molecular Weight (calculated)

43666.7 Da

IEP (calculated)

6.592

GRAVY (calculated)

-0.025

Length

407 amino acids

Sequence
(BLAST)

001: MKNLVFLFIL IGLSNSRIYS ASIYGYPGSF NVLDYGAAAD GITDDSQALL NTWNDACSSS AGYPQVIIPP NMIFLLSPMT LIGPCNSQNI YFVVSGSLVS
101: PSSPSVWTGQ DSSQWLAFRN VSGLVVGGSG TIDGQGKKWW DQSCRYHPEL DGCTKLAPTA LKFIFCSQSS ISNMYFANSA QTHILIERCN GFNVNNVMIQ
201: SPGNSPNTDG IHIQASQNVA ITNSKISSGD DCISIGDYSS NVQIYNIQCG PGHGISIGSL GKGGHSAQVS NIHVNNVFFY GTTNGARIKT WQVGRGFVRD
301: VTFENLQFNS VKNPIIIDQH YCDVRGACKE TGTGVQISNV VYQNIYGTSI TDVAINLNCS MSVPCTDITM QLIQLTPATP GKQVKAYCKN ASGQEYGIEP
401: GPCLSGI

Best Arabidopsis Sequence Match ( AT1G23460.2 )
(BLAST)

001: MVYTDLDILD ELENFDVLVD DDDDTKLLDW PSFTSRHSGK NLVNVDTFGA AGDGVSDDTQ AFVSAWSKAC STSKSVFLVP EGRRYLVNAT KFNGPCEQKL
101: IIQIDGTIVA PDEPSNWDSK FQRIWLEFSK LKGVVFQGKG VIDGSGSKWW AASCKKNKSN PCKSAPTALT IESSSGVKVS GLTIQNSQQM NFIIARSDSV
201: RVSKVMVSSP GDSPNTDGIH ITGSTNVILQ DCKIGTGDDC VSIVNASSNI KMKNIYCGPG HGISIGSLGK DNTTGIVTQV VLDTALLRET TNGLRIKTYQ
301: GGSGYVQGIR FTNVEMQDVA NPILIDQFYC DSPTTCQNQT SAVKISQIMY RNITGTTKSA KAIKFACSDT VPCSHIVLNN VNLEGNDGQV EAYCNSAEGF
401: GYGVIHPSAD CLYSHDDKGL DQTHKSEEAE TGHDEL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I672]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.