Factsheet for Solyc04g008230.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
extracellular 6
golgi 3
plasma membrane 4
endoplasmic reticulum 3
vacuole 3
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	extracellular

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075723	Potato	extracellular	96.73	97.53
VIT_05s0020g00420.t01	Wine grape	extracellular	70.82	72.75
Os05t0279900-00	Rice	cytosol	44.69	69.52
KRH36916	Soybean	extracellular, nucleus	66.33	68.57
GSMUA_Achr8P06220_001	Banana	extracellular	65.1	68.16
KRH11881	Soybean	extracellular	66.53	68.06
AT1G48100.1	Thale cress	extracellular	65.51	67.58
KRH42407	Soybean	extracellular	66.73	67.56
CDY43307	Canola	extracellular	65.1	67.44
Bra018707.1-P	Field mustard	extracellular	64.69	67.16
CDX93644	Canola	extracellular	64.69	67.16
KRH58524	Soybean	extracellular	66.33	66.33
GSMUA_Achr8P22240_001	Banana	extracellular	61.63	63.31
TraesCS7B01G230600.1	Wheat	extracellular	61.02	61.4
TraesCS7A01G330000.1	Wheat	extracellular	61.02	61.27
TraesCS7D01G326800.1	Wheat	extracellular	60.82	61.07
HORVU7Hr1G078960.2	Barley	extracellular	60.2	60.33
Solyc01g079130.1.1	Tomato	extracellular	55.71	57.84
Solyc01g100980.2.1	Tomato	extracellular	54.49	56.09
Zm00001d040725_P002	Maize	extracellular, vacuole	53.27	51.99
KXG32428	Sorghum	mitochondrion	53.67	50.58
Solyc05g005170.2.1	Tomato	nucleus	42.04	40.55
Solyc07g015870.2.1	Tomato	extracellular	36.73	40.09
KXG32426	Sorghum	extracellular	55.92	39.6
Solyc05g005040.2.1	Tomato	extracellular	37.76	39.28
Solyc04g015530.1.1	Tomato	cytosol	31.02	38.78
Solyc08g060970.2.1	Tomato	nucleus	31.02	38.29
Solyc01g087280.1.1	Tomato	extracellular	32.86	37.88
Solyc12g009420.1.1	Tomato	extracellular	30.82	37.1
Solyc09g098270.2.1	Tomato	cytosol	32.24	36.49
Solyc06g068040.2.1	Tomato	nucleus	32.24	36.16
Solyc03g116500.2.1	Tomato	nucleus	33.27	36.06
Zm00001d009167_P001	Maize	extracellular	55.51	35.51
Solyc03g116580.2.1	Tomato	extracellular	31.43	35.24
Solyc04g025440.2.1	Tomato	extracellular	33.06	35.22
Os01t0329300-01	Rice	plastid	54.49	35.18
Solyc10g080210.1.1	Tomato	extracellular	32.45	34.79
Solyc03g113230.1.1	Tomato	extracellular	28.16	33.58

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_28	InterPro:IPR012334
UniProt:K4BNX9	PFAM:PF00295	PANTHER:PTHR31375	PANTHER:PTHR31375:SF26	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence
SUPFAM:SSF51126	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc04g008230.2	EnsemblPlants:Solyc04g008230.2.1	UniParc:UPI0002766F5C	SEG:seg

Description

No Description!

Coordinates

chr4:-:1901661..1904764

Molecular Weight (calculated)

52871.8 Da

IEP (calculated)

4.648

GRAVY (calculated)

-0.116

Length

490 amino acids

Sequence
(BLAST)

001: MEKIFLLLCL IIIIITSNSI NVDARHHISK KTKSKKVISH NNNAPSPIEG SVNEPSPSPL PSSSPVSSPS SNVVPSDPSY GGAPTLDPEE DCIFDVMEYG
101: AVGDGSTDDT EAFVAAWKAA CQVESAVLLA PADRIFMITS TIFYGPCKPG LEFRVNGVLM TPEGPDCWPK KDSKRQWIVF YKLDNMTFSG TGTIEGNGEK
201: WWELPCKPHR GPNGSTLPGP CDSPSMIRFF MSSNLTVRGL RIQNSPMFHM KFDGCEGVLI DQLSISSPKL SPNTDGIHIE DTKSVGIYNS VIANGDDCIS
301: IGPGCSNVEI EAVTCGPSHG ISIGSLGVHN SQACVSNITV RNAIIRDSDN GVRIKTWQGG SGSVTGLSFD TIQMENVRNC IIIDQYYCLS KGCRNETSAV
401: SVGDISYRSI KGTYDVRSAP IHFACSDTVA CTNITMSEVE LLPHEGELME DPFCWNAYGI QQTLTIPPID CLQDGMPLAI GETVDYSCSI

Best Arabidopsis Sequence Match ( AT1G48100.1 )
(BLAST)

001: MRRLSGILVI YIISTVLFGH FTNVARARYH YHKGRHGVTH PLPPPPPPPL ETANPPDQVP SDPYPSPDPA PGDSDSGCVF DVTSFGAVGD GSCDDTAAFQ
101: DAWKAACAVE SGVVLAPEGG VFKITSTIFS GPCKPGLVFQ LDGVLMPPDG PEEWPEKDNK NQWLVFYRLD GFTFSGKGTV EGNGQKWWDL PCKPHRGPDG
201: SSSSGPCASP TMIRFFMSNN IEVKGLRIQN SPQFHMKFDG CQGVLINEIQ ISSPKLSPNT DGIHLGNTRS VGIYNSVVSN GDDCISIGTG CSDVDIQGVT
301: CGPSHGISIG SLGVHNSQAC VSNITVRNTV IRDSDNGLRV KTWQGGTGSV SNLLFENIQM ENVLNCIIVD QYYCQSKDCR NETSAVKVFD VEYRNIKGTY
401: DVRSPPIHFA CSDTVACTNI TMSEVELLPE EGELVDDPFC WNAYGKQETL TIPPIDCLLD GSPVVEEAYD SNYGC

Arabidopsis Description

Polygalacturonase At1g48100 [Source:UniProtKB/Swiss-Prot;Acc:Q949Z1]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.