Factsheet for Solyc08g060970.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400056828	Potato	extracellular	95.72	95.48
PGSC0003DMT400008955	Potato	extracellular	83.38	95.11
GSMUA_Achr9P22320_001	Banana	extracellular	43.58	41.89
Solyc12g009420.1.1	Tomato	extracellular	40.81	39.8
GSMUA_Achr11P...	Banana	extracellular	41.31	39.42
Solyc03g116580.2.1	Tomato	extracellular	42.82	38.9
GSMUA_Achr4P13200_001	Banana	extracellular	41.31	38.86
Solyc06g068040.2.1	Tomato	nucleus	42.07	38.22
TraesCS2A01G405600.1	Wheat	extracellular	30.23	37.62
TraesCS2B01G423400.1	Wheat	plastid	33.25	37.61
Solyc03g113230.1.1	Tomato	extracellular	38.79	37.47
Solyc03g116500.2.1	Tomato	nucleus	42.32	37.17
TraesCS2B01G423300.1	Wheat	extracellular	37.53	37.16
TraesCS2D01G402100.1	Wheat	extracellular	37.78	37.04
TraesCS2A01G405300.1	Wheat	extracellular, nucleus	37.53	36.79
Solyc04g015530.1.1	Tomato	cytosol	36.27	36.73
HORVU2Hr1G096130.1	Barley	extracellular	37.28	36.54
Solyc01g087280.1.1	Tomato	extracellular	38.79	36.24
TraesCS2A01G405100.1	Wheat	extracellular	38.04	36.21
KXG26899	Sorghum	extracellular	38.04	35.95
TraesCS2D01G402200.1	Wheat	extracellular	35.26	35.81
Solyc10g080210.1.1	Tomato	extracellular	40.81	35.45
TraesCS2D01G402300.1	Wheat	extracellular	29.47	35.14
TraesCS2D01G402000.1	Wheat	extracellular	37.28	34.58
TraesCS2B01G423200.1	Wheat	extracellular	36.27	33.88
Solyc09g098270.2.1	Tomato	cytosol	36.27	33.26
Solyc05g005040.2.1	Tomato	extracellular	38.79	32.7
Solyc07g015870.2.1	Tomato	extracellular	36.78	32.52
Zm00001d039668_P001	Maize	plastid	35.77	32.49
Solyc01g079130.1.1	Tomato	extracellular	38.29	32.2
Solyc01g100980.2.1	Tomato	extracellular	38.54	32.14
Solyc04g025440.2.1	Tomato	extracellular	36.27	31.3
Solyc04g008230.2.1	Tomato	nucleus	38.29	31.02
Solyc05g005170.2.1	Tomato	nucleus	38.54	30.12
Os01t0172900-00	Rice	nucleus	21.66	29.15
GSMUA_Achr4P06370_001	Banana	extracellular	39.55	20.82

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:K4CKP2
PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF42	InterPro:PbH1	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc08g060970.2	EnsemblPlants:Solyc08g060970.2.1
UniParc:UPI000276CA7E	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr8:-:46145278..46150021

Molecular Weight (calculated)

43156.2 Da

IEP (calculated)

7.832

GRAVY (calculated)

-0.105

Length

397 amino acids

Sequence
(BLAST)

001: MEGQALIFLI CITTFLIERS VAGIFDVTCY GAFGDGVHDD TQAFKQVWRA ACSDENPSIL IPSEKSFLVG PITFQGPCKS ANIHLQLLGS IVAPKDPVAW
101: TGCENVCWIY FTGVAGLFIN GSGTINGNGQ RWWDTPSRTR VNGTCTKPTV VQFNYCNGLR LNGIKLVNSS RDHIILTYNK GVTISNIHIS APNYSRNTDG
201: IDIFFSRQVQ IRDSIIQTGD DCIGINTGCS DINITGIRCG PGHGISIGSL GPNNTFANVE NVYITNCHLE DTQNGVRIKT WQGGSGYARS IHFENINLKN
301: VENPIIIDQN YCNSVHSCQP QVSAVKVSNV TYKKIYGTTS SKLAIKMNCS NSTACTNVEL ENIYITSVEP GKKIFATCNN VKGKASSNSP HVSCLSQ

Best Arabidopsis Sequence Match ( AT5G27530.1 )
(BLAST)

001: MEDMVTIQKN GDIPAFVRVT TQWHGLMSFP ETILRISILI NFICFGLVNG QIYNVLKFGA EGDGQTDDSN AFLQAWNATC GGEENINTLF IPSGKTYLLQ
101: PIEFKGPCKS TSIKLQLDGI IVAPSNITSW SNPKSQTWIS FSGVPGLMID GSGTINGRGS SFWEALHICN CNNLTINGIT SIDSPKSHIS IKNCHYVAIS
201: KINILAPENS PNTDGIDISY STNVNIFDST IQTGDDCIAI NTGSSSINIT QVNCGPGHGI SVGSLGADGE NAAVSDVYVT QCTFNKTTNG ARIKTWQGGQ
301: GYARNISFEN ITLINVQNPI IIDQQYTDKV LLDATKDSAV AISSVKYVGF QGTTLNEDAI MLKCSAITYC KDMVIDDIEV TMENGEKPKV ECENVEGESS
401: DNDLMRECFN SNSTFSGGSV GGFGWVYECP CVRMGGPNWR FSSRISRTFL DPSSFHVH

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K4C2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.