Factsheet for Solyc04g025440.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
golgi 5
plasma membrane 6
endoplasmic reticulum 5
vacuole 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400080722	Potato	extracellular	95.87	95.87
CDY04708	Canola	plastid	43.04	71.48
Solyc09g098270.2.1	Tomato	cytosol	66.96	71.13
Bra024602.1-P	Field mustard	cytosol	64.57	67.19
Bra012375.1-P	Field mustard	cytosol	65.0	67.04
CDY25786	Canola	cytosol	65.0	67.04
CDY54292	Canola	cytosol	65.0	67.04
AT1G23460.1	Thale cress	extracellular	66.74	66.74
Bra016345.1-P	Field mustard	extracellular	66.52	65.38
CDY11585	Canola	extracellular	63.48	62.53
AT1G70500.1	Thale cress	extracellular	63.26	62.18
CDY47139	Canola	extracellular	63.04	62.1
Bra016213.1-P	Field mustard	extracellular	63.04	62.1
GSMUA_Achr7P01870_001	Banana	cytosol	58.91	61.59
CDY44150	Canola	extracellular, golgi, plastid	66.52	60.96
GSMUA_Achr4P22100_001	Banana	extracellular	58.48	57.97
CDY41445	Canola	endoplasmic reticulum	66.74	55.22
Zm00001d015129_P001	Maize	mitochondrion	50.0	44.57
TraesCS6B01G118000.2	Wheat	extracellular, golgi, vacuole	50.87	44.32
EES04449	Sorghum	extracellular	50.0	44.23
HORVU6Hr1G015390.2	Barley	extracellular, golgi	50.22	43.75
Os02t0130200-01	Rice	extracellular, golgi	48.26	43.7
TraesCSU01G113500.1	Wheat	extracellular, golgi, vacuole	49.78	43.37
Solyc06g068040.2.1	Tomato	nucleus	41.09	43.25
TraesCS6A01G084500.1	Wheat	extracellular, golgi, vacuole	49.35	43.24
Solyc04g015530.1.1	Tomato	cytosol	36.3	42.6
Solyc03g116500.2.1	Tomato	nucleus	41.3	42.04
Solyc01g087280.1.1	Tomato	extracellular	38.26	41.41
Solyc12g009420.1.1	Tomato	extracellular	33.91	38.33
Solyc08g060970.2.1	Tomato	nucleus	31.3	36.27
Solyc03g113230.1.1	Tomato	extracellular	32.17	36.01
Solyc10g080210.1.1	Tomato	extracellular	35.22	35.45
Solyc07g015870.2.1	Tomato	extracellular	34.57	35.41
Solyc01g079130.1.1	Tomato	extracellular	35.65	34.75
Solyc01g100980.2.1	Tomato	extracellular	35.87	34.66
KRG99363	Soybean	extracellular	65.65	34.28
Solyc03g116580.2.1	Tomato	extracellular	31.96	33.64
Solyc05g005040.2.1	Tomato	extracellular	34.35	33.55
Solyc05g005170.2.1	Tomato	nucleus	36.74	33.27
Solyc04g008230.2.1	Tomato	nucleus	35.22	33.06

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_28	InterPro:IPR012334
UniProt:K4BQY9	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF29	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc04g025440.2	EnsemblPlants:Solyc04g025440.2.1	UniParc:UPI0002765A30
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:-:23031054..23034408

Molecular Weight (calculated)

49824.2 Da

IEP (calculated)

6.753

GRAVY (calculated)

-0.121

Length

460 amino acids

Sequence
(BLAST)

001: MVKILFFLFL VWLMGALGAA KNNFLDDVIL SELDDLDVED SDEAELFDLP RWGIDRGNKI LVNVDSFGAV GDGTSDDTKA FVDAWKQACS TPKSVLLVPA
101: GRSYLVNATR FRGPCVGILR VQIEGTIVAP DDPKNWNFAK NGRIWLGFFN LTGALFQGGG VVDGSGSKWW AASCKKNKTN PCVAAPTALT IYGSSGIKVR
201: DLTIQNGQQM NFAISRSDSI RIAGVTVSAP EDSPNTDGIH ITESTNVVLQ NSKIGTGDDC VSIVNASSHI KMKRIYCGPG HGISIGSLGK DNSVGIVTGI
301: VLDNAFLRGT TNGLRIKTWQ GGSGYVRAVR FQNVRMQDVS NPIIIDQFYC DSPKSCQNQT SAVEISEIVY RNVSGTSKSQ KAIKFACSDN VPCSHIVLNN
401: INLETRDGTA EVYCNSATGI GYGYIHPSAE CLNSSDKKIK QKMDARLVEP REEYIVHTEL

Best Arabidopsis Sequence Match ( AT1G23460.1 )
(BLAST)

001: MMDKLFILSL LGLLLVTAYG AAGKMVYTDL DILDELENFD VLVDDDDDTK LLDWPSFTSR HSGKNLVNVD TFGAAGDGVS DDTQAFVSAW SKACSTSKSV
101: FLVPEGRRYL VNATKFNGPC EQKLIIQIDG TIVAPDEPSN WDSKFQRIWL EFSKLKGVVF QGKGVIDGSG SKWWAASCKK NKSNPCKSAP TALTIESSSG
201: VKVSGLTIQN SQQMNFIIAR SDSVRVSKVM VSSPGDSPNT DGIHITGSTN VILQDCKIGT GDDCVSIVNA SSNIKMKNIY CGPGHGISIG SLGKDNTTGI
301: VTQVVLDTAL LRETTNGLRI KTYQGGSGYV QGIRFTNVEM QDVANPILID QFYCDSPTTC QNQTSAVKIS QIMYRNITGT TKSAKAIKFA CSDTVPCSHI
401: VLNNVNLEGN DGQVEAYCNS AEGFGYGVIH PSADCLYSHD DKGLDQTHKS EEAETGHDEL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I672]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.