Factsheet for GSMUA_Achr7P01870_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 3
plasma membrane 1
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P22100_001	Banana	extracellular	77.5	73.49
CDY04708	Canola	plastid	40.91	64.98
Solyc09g098270.2.1	Tomato	cytosol	59.32	60.28
PGSC0003DMT400080722	Potato	extracellular	62.05	59.35
CDY54292	Canola	cytosol	59.77	58.97
Solyc04g025440.2.1	Tomato	extracellular	61.59	58.91
Bra012375.1-P	Field mustard	cytosol	59.55	58.74
Bra024602.1-P	Field mustard	cytosol	58.86	58.6
CDY25786	Canola	cytosol	59.32	58.52
AT1G23460.1	Thale cress	extracellular	61.14	58.48
PGSC0003DMT400055713	Potato	extracellular	59.77	57.42
Bra016345.1-P	Field mustard	extracellular	59.32	55.77
CDY47139	Canola	extracellular	58.86	55.46
CDY11585	Canola	extracellular	58.86	55.46
Bra016213.1-P	Field mustard	extracellular	58.86	55.46
AT1G70500.1	Thale cress	extracellular	58.18	54.7
CDY44150	Canola	extracellular, golgi, plastid	59.32	51.99
Zm00001d015129_P001	Maize	mitochondrion	55.91	47.67
CDY41445	Canola	endoplasmic reticulum	59.55	47.12
EES04449	Sorghum	extracellular	55.68	47.12
Os02t0130200-01	Rice	extracellular, golgi	52.73	45.67
TraesCS6A01G084500.1	Wheat	extracellular, golgi, vacuole	54.09	45.33
GSMUA_Achr4P24520_001	Banana	cytosol, extracellular, nucleus	39.32	45.29
TraesCSU01G113500.1	Wheat	extracellular, golgi, vacuole	53.86	44.89
TraesCS6B01G118000.2	Wheat	extracellular, golgi, vacuole	53.86	44.89
HORVU6Hr1G015390.2	Barley	extracellular, golgi	53.64	44.7
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus	38.18	42.32
GSMUA_Achr11P...	Banana	extracellular	39.55	39.91
GSMUA_AchrUn_...	Banana	extracellular	25.91	39.58
GSMUA_Achr1P22940_001	Banana	extracellular	39.55	39.46
GSMUA_Achr3P13670_001	Banana	extracellular	40.68	39.34
GSMUA_Achr11P...	Banana	extracellular	35.23	37.26
GSMUA_Achr2P14330_001	Banana	extracellular	37.73	36.56
GSMUA_Achr9P22320_001	Banana	extracellular	33.18	35.35
GSMUA_Achr9P16670_001	Banana	extracellular, plasma membrane	39.32	34.53
GSMUA_AchrUn_...	Banana	mitochondrion	31.82	34.4
GSMUA_Achr8P06220_001	Banana	extracellular	36.36	34.19
GSMUA_Achr8P22240_001	Banana	extracellular	36.82	33.96
GSMUA_Achr1P12720_001	Banana	extracellular	31.59	33.9
GSMUA_Achr4P02960_001	Banana	extracellular	36.36	33.68
GSMUA_Achr4P13200_001	Banana	extracellular	32.27	33.65
GSMUA_Achr6P22080_001	Banana	extracellular	37.05	33.61
GSMUA_Achr5P09080_001	Banana	extracellular	36.59	33.06
GSMUA_Achr1P27280_001	Banana	extracellular	37.05	31.96
GSMUA_Achr3P08400_001	Banana	extracellular	40.0	31.32
KRG99363	Soybean	extracellular	59.09	29.51
GSMUA_Achr4P06370_001	Banana	extracellular	33.18	19.36

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	EnsemblPlantsGene:GSMUA_Achr7G01870_001	EnsemblPlants:GSMUA_Achr7P01870_001
EnsemblPlants:GSMUA_Achr7T01870_001	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M0TDX7	PFAM:PF00295	ScanProsite:PS00502
PANTHER:PTHR31375	PANTHER:PTHR31375:SF29	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	UniParc:UPI00029655FD

Description

Putative Probable polygalacturonase At1g80170 [Source:GMGC_GENE;Acc:GSMUA_Achr7G01870_001]

Coordinates

chr7:-:1442046..1446710

Molecular Weight (calculated)

47557.5 Da

IEP (calculated)

6.933

GRAVY (calculated)

-0.213

Length

440 amino acids

Sequence
(BLAST)

001: MDSVLMRGSE RVARIPVNVD SFGAVGDGVA DDTQAFRDAW ETACSLKNAV FLVPERRHYK VNATKFRGPC QKNLIVQERV HLGIDQVSGT IVAPDEPKDW
101: DLEHPRMWLF FSKLKGVKFQ GGGIIDGSGS KWWAASCKIT TTNPCKGAPT ALTIDSSSAI RVKGLTVQSA QQMHFTISRS DAVRISGVRI LSPEDSPNTD
201: GIHITESSNV AIQNCHIGTG DDCVSIVNAS SNIKMKNIEC GPGHGISIGS LGKDNSTAIV TGVVLDTATL TGTENGLRIK TWQDVTLQLI ICMVNCLRSQ
301: IAEQGGSGYV KSVRFENVKM NDVKNPIIID QFYCDSPKSC KNQTSAVKIS QVIYRNISGT SRTPKAMKFA CSDSVPCSNI VLNNINLETE NGTAETFCNC
401: AMGFDYGIVQ PKADCLKSSS CGGVEEDNQA QTHDPIHTEL

Best Arabidopsis Sequence Match ( AT1G23460.1 )
(BLAST)

001: MMDKLFILSL LGLLLVTAYG AAGKMVYTDL DILDELENFD VLVDDDDDTK LLDWPSFTSR HSGKNLVNVD TFGAAGDGVS DDTQAFVSAW SKACSTSKSV
101: FLVPEGRRYL VNATKFNGPC EQKLIIQIDG TIVAPDEPSN WDSKFQRIWL EFSKLKGVVF QGKGVIDGSG SKWWAASCKK NKSNPCKSAP TALTIESSSG
201: VKVSGLTIQN SQQMNFIIAR SDSVRVSKVM VSSPGDSPNT DGIHITGSTN VILQDCKIGT GDDCVSIVNA SSNIKMKNIY CGPGHGISIG SLGKDNTTGI
301: VTQVVLDTAL LRETTNGLRI KTYQGGSGYV QGIRFTNVEM QDVANPILID QFYCDSPTTC QNQTSAVKIS QIMYRNITGT TKSAKAIKFA CSDTVPCSHI
401: VLNNVNLEGN DGQVEAYCNS AEGFGYGVIH PSADCLYSHD DKGLDQTHKS EEAETGHDEL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I672]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.