Factsheet for GSMUA_AchrUn_randomP21330_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
vacuole 1
plastid 1
extracellular 2
plasma membrane 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	extracellular	67.57	95.49
HORVU3Hr1G024420.1	Barley	cytosol	22.36	40.81
TraesCS3D01G130300.1	Wheat	extracellular	38.08	38.65
TraesCS3B01G148500.1	Wheat	extracellular	37.84	38.4
TraesCS3A01G129400.1	Wheat	extracellular	38.57	38.29
GSMUA_Achr4P24520_001	Banana	cytosol, extracellular, nucleus	35.63	37.96
TraesCS3A01G129500.1	Wheat	extracellular	36.61	36.61
GSMUA_Achr9P22320_001	Banana	extracellular	37.1	36.56
TraesCS3D01G130400.1	Wheat	extracellular	36.36	35.92
TraesCS3B01G148600.1	Wheat	extracellular	36.36	35.92
KXG31745	Sorghum	extracellular	37.1	35.03
Zm00001d039668_P001	Maize	plastid	36.12	33.64
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus	32.68	33.5
GSMUA_Achr4P13200_001	Banana	extracellular	34.4	33.18
GSMUA_Achr2P14330_001	Banana	extracellular	36.85	33.04
GSMUA_Achr11P...	Banana	extracellular	33.42	32.69
GSMUA_Achr4P02960_001	Banana	extracellular	37.84	32.42
GSMUA_Achr7P01870_001	Banana	cytosol	34.4	31.82
GSMUA_Achr1P12720_001	Banana	extracellular	31.45	31.22
GSMUA_Achr11P...	Banana	extracellular	33.42	31.19
GSMUA_Achr5P09080_001	Banana	extracellular	37.1	31.01
GSMUA_Achr3P13670_001	Banana	extracellular	34.64	30.99
GSMUA_Achr6P22080_001	Banana	extracellular	36.85	30.93
GSMUA_Achr8P06220_001	Banana	extracellular	35.14	30.56
GSMUA_Achr9P16670_001	Banana	extracellular, plasma membrane	37.1	30.14
GSMUA_Achr4P22100_001	Banana	extracellular	33.66	29.53
GSMUA_Achr1P27280_001	Banana	extracellular	36.61	29.22
Os01t0172900-00	Rice	nucleus	20.88	28.81
GSMUA_Achr1P22940_001	Banana	extracellular	31.2	28.8
GSMUA_Achr8P22240_001	Banana	extracellular	32.19	27.46
GSMUA_Achr3P08400_001	Banana	extracellular	35.63	25.8
GSMUA_Achr4P06370_001	Banana	extracellular	33.17	17.9

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	EnsemblPlantsGene:GSMUA_AchrUn_randomG21330_001	EnsemblPlants:GSMUA_AchrUn_randomP21330_001
EnsemblPlants:GSMUA_AchrUn_randomT21330_001	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M0UB41	PFAM:PF00295	PANTHER:PTHR31375
PANTHER:PTHR31375:SF97	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	UniParc:UPI000295B472	SEG:seg

Description

Putative Polygalacturonase [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG21330_001]

Coordinates

chrchrUn_random:-:104171914..104173761

Molecular Weight (calculated)

44481.2 Da

IEP (calculated)

8.101

GRAVY (calculated)

-0.026

Length

407 amino acids

Sequence
(BLAST)

001: MAAAWWSQAH HSCQRAKSRM LLAKWIQLIW YQDSYYRVAC CSFLLLPPHD PGIDLQAFVQ AWAAACADTR SPVILVPSGK TFLIGEITLS GPCKSSIDFR
101: LQGDIVAPNS KWTNDKASLL TFTYVNRLIV HGYGQIDGRG QLWWDLFNKK QVSDRPFVSI LTFHHCNDLY VKGITIKNGP DKHMTFFKCV GVTISWVKVT
201: APGDSPNTDG MFFSGCQNVD VSGSIIGTGD DCVAIGPDCS KININRVRCG PGHGFSIGSL GRDGAEQSVE NIRVSDSSVT DALTGARIKT WQGGSGYVRG
301: IVFENLRLYS VKTPIMIDQF YCNGNSCQNQ TSAVAISDVQ FVNFSGTTTT ENPIKILCSK SVPCKGIHLE NVKLSMVGVT TPVKSVCINA NDNQFIRVDP
401: DVQCVAG

Best Arabidopsis Sequence Match ( AT1G70500.1 )
(BLAST)

001: MIKPFIISLF ALLMVASYGA TGKMLFKELD ILGKLENLDV PEDDIEDDVT FFDFSSFTSQ YSGKNLVNVD SFNASGDGVS DDTQAFIRAW TMACSAPNSV
101: LLVPQGRSYL VNATKFDGPC QEKLIIQIDG TIIAPDEPSQ WDPKFPRNWL QFSKLQGVVF QGNGVIDGSG TKWWAASCKK NKSNPCVGAP TALTIYSSSN
201: VYVRGLTIRN SQQMHLIIQR STTVRISRVM VTSPGDSPNT DGIHITASTD VVVQDSKIST GDDCVSIVNG SAKIKMKRIY CGPGHGISIG SLGQGHSKGT
301: VTAVVLETAF LKNTTNGLRI KTWQGGNGYV KGVRFENVVM QDVANPIIID QFYCDSPSTC QNQTSAVHIS EIMYRNITGT TKSSKAINFK CSDAVPCSHI
401: VLNNINLEGN DGKVEAYCNS AEGFGYGVVH PSADCLYSHD DKSLNQTDQY LAETIMVEKE TENAHDEL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9CAL5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.