Factsheet for TraesCS3D01G130400.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G148600.1	Wheat	extracellular	94.66	94.66
TraesCS3A01G129500.1	Wheat	extracellular	92.23	93.37
HORVU3Hr1G024420.1	Barley	cytosol	44.42	82.06
TraesCS3D01G130300.1	Wheat	extracellular	76.21	78.3
Zm00001d039668_P001	Maize	plastid	58.01	54.69
KXG31745	Sorghum	extracellular	55.58	53.13
Os01t0172900-00	Rice	nucleus	32.52	45.42
GSMUA_AchrUn_...	Banana	extracellular	28.88	41.32
TraesCS1D01G129600.2	Wheat	cytosol, extracellular, nucleus	30.34	38.58
TraesCS2D01G402100.1	Wheat	extracellular	37.62	38.27
TraesCS2D01G402200.1	Wheat	extracellular	35.92	37.85
TraesCS2D01G402300.1	Wheat	extracellular	30.58	37.84
TraesCS7D01G164200.1	Wheat	extracellular	38.35	37.62
GSMUA_AchrUn_...	Banana	mitochondrion	35.92	36.36
TraesCS5D01G470100.1	Wheat	extracellular	35.19	35.37
TraesCS5D01G470200.1	Wheat	extracellular	35.19	34.61
TraesCS1D01G066400.1	Wheat	cytosol	31.8	34.38
TraesCS1D01G370300.3	Wheat	extracellular	33.25	33.33
TraesCS2D01G402000.1	Wheat	extracellular	34.47	33.18
TraesCS4D01G243600.1	Wheat	extracellular	34.47	32.79
TraesCS1D01G370700.1	Wheat	extracellular	32.04	31.5
TraesCS1D01G066300.1	Wheat	extracellular, golgi	37.38	30.86
TraesCS1D01G311000.1	Wheat	extracellular	34.47	29.65
TraesCS1D01G370800.1	Wheat	extracellular	29.37	27.88
TraesCS7D01G326800.1	Wheat	extracellular	32.28	27.25
TraesCS3D01G021700.1	Wheat	extracellular	28.88	26.98
TraesCS1D01G425600.1	Wheat	extracellular	34.22	26.76
TraesCS3D01G223900.1	Wheat	extracellular	33.25	25.56

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334	PFAM:PF00295
ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF97	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence
SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS3D01G130400	EnsemblPlants:TraesCS3D01G130400.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3D:-:90379489..90381743

Molecular Weight (calculated)

44064.4 Da

IEP (calculated)

7.237

GRAVY (calculated)

-0.077

Length

412 amino acids

Sequence
(BLAST)

001: MRVAAAGRTS LFLVLPMLLL LVVSATVRPA AAAATKVWKG EGTRYSVMAF HAAGDGETGD TKAFEETWDS ACRDSGGANV YVPAGRTFLL RDATFNGPCK
101: SPITMQVDGD IVAPSTLWQL KSSSVLTFHE VDNLTVDGCG QIDGRGAPWW DCYNHKKCSA RPMLVSFSFC NGLRVTNVRL KDSALKHISV YRCSQALVHN
201: VSISAPCDSP NTDGITIGAS DHVRVSSSSI QSGDDCVSII TETTDVNITD IACGPGHGIS VGSLGGAGEG PAMVERITVS NCKFFNTTSG VRIKSWQGGQ
301: GKANGFIFRD LNMTEVQHPI DIDQFYCPQG NCPERQGGVA ITDARFINIH GTSSEREAIK IMCSESVPCH GIYLDNVDLS WCKHTAPPQA KVMNAHGSVA
401: GMVKPQVRFL GR

Best Arabidopsis Sequence Match ( AT1G78400.1 )
(BLAST)

001: MVSTISGFSL ILFIAAVASS ISAAPSAALV GRKVFDVRSY GARGDGKTDN TMAFTKAWKD ACQWKGLPRV YIPFGTFYLG AVAFTGPCKS RISFIIKGTL
101: LAPKDPNAIK QDSWIIFRYV DYLTVSGGGI LDGQGSYSWP LNNCRQTHNC RALPMNMGFQ FVRFSRLTRI KSINSKMGHL NFFSVQHFDI TRVNIKAPGD
201: SPNTDGIKIG SSNHMKIHHV DIATGDDCIA ILSGTFNLDI NKVNCGPGHG ISVGSLGKFK GEKSVQGLIV RNSIFNGTSN GVRIKTWPSP GEPNLVSNFL
301: FKNLQMIDVQ SPINIDQRYC PNPPCSFQSF SKIQIRDVKF QNIWGTSTAK EAVKLQCSKN VPCKNVQLFN INIVHRGRDG PATSVCENVG GWIGGKISPP
401: SCIR

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IA77]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.