Factsheet for TraesCS1D01G425600.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
extracellular 5
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G418000.1	Wheat	extracellular	92.22	95.29
TraesCS1B01G448100.1	Wheat	extracellular	94.88	94.34
HORVU1Hr1G091430.5	Barley	extracellular	92.79	88.27
Os05t0578600-01	Rice	cytosol, extracellular	51.8	87.5
EES20001	Sorghum	extracellular	75.9	74.49
TraesCS3D01G223900.1	Wheat	extracellular	70.4	69.22
Zm00001d009667_P001	Maize	extracellular, mitochondrion, plastid	64.14	65.5
GSMUA_Achr6P22080_001	Banana	extracellular	59.39	64.54
GSMUA_Achr5P09080_001	Banana	extracellular	59.2	64.07
GSMUA_Achr4P02960_001	Banana	extracellular	57.5	63.79
GSMUA_Achr1P27280_001	Banana	extracellular	57.87	59.8
VIT_01s0127g00400.t01	Wine grape	extracellular, mitochondrion, plastid	57.69	58.69
CDX69569	Canola	extracellular	48.2	57.86
CDY09873	Canola	extracellular	48.2	57.86
Bra008748.1-P	Field mustard	extracellular	48.01	57.63
Solyc05g005170.2.1	Tomato	nucleus	55.22	57.28
AT5G14650.1	Thale cress	extracellular	46.87	56.78
PGSC0003DMT400035162	Potato	extracellular	55.03	56.75
KRG93260	Soybean	extracellular	47.63	56.66
KRH56581	Soybean	extracellular	47.06	56.49
Bra031724.1-P	Field mustard	extracellular	54.65	55.92
VIT_14s0066g01060.t01	Wine grape	extracellular	51.23	55.9
CDY37962	Canola	extracellular, golgi, vacuole	56.36	55.83
KRH45648	Soybean	nucleus	56.74	55.58
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	56.17	55.53
CDX93397	Canola	extracellular, golgi, vacuole	56.17	55.53
KRG99364	Soybean	extracellular, nucleus	56.55	55.39
CDY54228	Canola	extracellular, golgi, vacuole	54.84	54.73
CDY50367	Canola	extracellular, golgi	55.6	54.66
CDY20962	Canola	extracellular, golgi, vacuole	55.03	54.61
CDY20612	Canola	extracellular	55.03	54.61
Solyc07g015870.2.1	Tomato	extracellular	46.3	54.34
CDY47212	Canola	extracellular	55.22	54.29
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	54.65	54.24
Bra027148.1-P	Field mustard	extracellular	55.03	54.1
AT1G60590.1	Thale cress	extracellular	55.22	53.89
AT1G10640.1	Thale cress	extracellular, golgi	54.08	53.57
CDY34877	Canola	extracellular, golgi	49.34	53.17
PGSC0003DMT400077010	Potato	cytosol	45.73	52.05
TraesCS7D01G326800.1	Wheat	extracellular	38.14	41.19
TraesCS1D01G311000.1	Wheat	extracellular	37.38	41.13
TraesCS5D01G470100.1	Wheat	extracellular	31.69	40.73
TraesCS5D01G470200.1	Wheat	extracellular	30.93	38.9
TraesCS1D01G129600.2	Wheat	cytosol, extracellular, nucleus	23.53	38.27
TraesCS2D01G402100.1	Wheat	extracellular	29.03	37.78
TraesCS3D01G130300.1	Wheat	extracellular	28.27	37.16
TraesCS2D01G402200.1	Wheat	extracellular	27.51	37.08
TraesCS1D01G370300.3	Wheat	extracellular	28.65	36.74
TraesCS7D01G164200.1	Wheat	extracellular	28.84	36.19
TraesCS2D01G402300.1	Wheat	extracellular	22.77	36.04
TraesCS2D01G402000.1	Wheat	extracellular	29.03	35.75
TraesCS3D01G130400.1	Wheat	extracellular	26.76	34.22
TraesCS4D01G243600.1	Wheat	extracellular	27.7	33.72
TraesCS1D01G066400.1	Wheat	cytosol	24.29	33.6
TraesCS1D01G370800.1	Wheat	extracellular	26.95	32.72
TraesCS1D01G370700.1	Wheat	extracellular	26.0	32.7
TraesCS3D01G021700.1	Wheat	extracellular	26.38	31.52
TraesCS1D01G066300.1	Wheat	extracellular, golgi	28.65	30.26

Protein Annotations

Gene3D:2.160.20.10	MapMan:21.3.5.1.3	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334	PFAM:PF00295
PANTHER:PTHR31375	PANTHER:PTHR31375:SF56	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710
SUPFAM:SSF51126	SignalP:SignalP-noTM	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS1D01G425600	EnsemblPlants:TraesCS1D01G425600.1	SEG:seg

Description

No Description!

Coordinates

chr1D:-:479228104..479231331

Molecular Weight (calculated)

56323.8 Da

IEP (calculated)

7.144

GRAVY (calculated)

-0.286

Length

527 amino acids

Sequence
(BLAST)

001: MSRGLAVLLL VVLLALSSGV GFCDARSGKR WRQNRGPSTT MFRRKGKGKN GGGSPPHSHR HQSPAMPAPP SPGGGNGHAS QSPPPPLLPP QAPPAPRSSP
101: PPLPPSLPPQ APPSPPPEEP SQGMVFSVVA FGARGDGVTD DTQAFEAAWT AACKVEASTV LVPPELEFVV GPISFLGPNC KPNIIFQLDG TISAKTGARA
201: WGSGLLQWLE FTKLNGISIQ GSGVINGQGK EWWTYSDSND DDDDMDSYTD QELEKMPQIK PTALRFYGSS NVRVTGISII NSPQCHLKFD SCQGVMVHNL
301: TISSPENSPN TDGIHLQNSK DVNIHHTDLA CGDDCISIQT GCSDVNIHNV NCGPGHGISI GGLGRYNTKA CVSNITVRDV NMFKTMTGVR IKTWQGGSGL
401: VQGIRFSNIH MSEVQTPIMI DQFYCDKTSC TNQTSAVAVS GVQYENIRGT FTIKPAHFAC SDSSPCSEIT LTGIQLRPLI VPQYHTCSSP FCWQAFGELY
501: TPTIPPISCL QLGKPAGNRV LSDHDQC

Best Arabidopsis Sequence Match ( AT1G10640.1 )
(BLAST)

001: MIMRRSLSLR SITMMILMAV LVWSVTLETC IARRGRHWRH SHRSSSDLSD SLSNKKPKSH GNSHHHSSHN NNHHHKSKPK PKPKLKTPPK AHDNNSPVVS
101: GPPKVQPPPL PPQKGSQVFN VMDFGAKGDG KCDDTKAFEA AWVAACKIEA SVMLVPPEYT YLVGPISFSG PYCQANIVFQ LDGTIIAPTD SKTWGKGLMW
201: WIDFTKLKGI KVQGKGVIDG RGSGWWQQDS PFIDSDTKLI VPLNNSANQN PPMPIRSELD ERMPSIKPTA LRFSGSFGVE VTGITIQNSP QCHLKFDDCV
301: GVVVHDIAVS SPGDSPNTDG IHLQNTKDVL IHSTTLACGD DCISIQTGCS NVFVHNVNCG PGHGISIGSL GKEGTKACVS NITVRDVAMH NTMTGVRIKT
401: WQGGVGSVKG IIFSNIQLNQ VQIPITINQF YCDHSKCKNQ TSAVAVEGVT YERIKGTYTV KPVHFACSDN FPCVDVQLSS IELKPVQEKY RMYDAYCWQT
501: FGELNTPTLP PIDCLKIGKP PRNKVQSDHD VC

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I5U6]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.