Factsheet for Os05t0578600-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 1
extracellular 1
plasma membrane 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, extracellular, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0637500-00	Rice	cytosol, extracellular	82.37	76.04
EES20001	Sorghum	extracellular	91.99	53.45
TraesCS1A01G418000.1	Wheat	extracellular	86.22	52.75
TraesCS1D01G425600.1	Wheat	extracellular	87.5	51.8
TraesCS1B01G448100.1	Wheat	extracellular	86.86	51.13
Os01t0296200-00	Rice	extracellular	42.63	50.0
HORVU1Hr1G091430.5	Barley	extracellular	86.86	48.92
Zm00001d009667_P001	Maize	extracellular, mitochondrion, plastid	80.13	48.45
Os01t0636500-01	Rice	extracellular	82.69	47.96
GSMUA_Achr6P22080_001	Banana	extracellular	71.79	46.19
Os01t0549000-00	Rice	extracellular	41.67	45.77
Os05t0279900-00	Rice	cytosol	45.83	45.4
GSMUA_Achr5P09080_001	Banana	extracellular	70.51	45.17
GSMUA_Achr4P02960_001	Banana	extracellular	67.63	44.42
KRG93260	Soybean	extracellular	61.54	43.34
GSMUA_Achr1P27280_001	Banana	extracellular	70.19	42.94
KRH56581	Soybean	extracellular	60.26	42.82
AT5G14650.1	Thale cress	extracellular	58.97	42.3
VIT_14s0066g01060.t01	Wine grape	extracellular	65.38	42.24
CDY09873	Canola	extracellular	59.29	42.14
CDX69569	Canola	extracellular	59.29	42.14
Bra008748.1-P	Field mustard	extracellular	59.29	42.14
VIT_01s0127g00400.t01	Wine grape	extracellular, mitochondrion, plastid	69.87	42.08
Bra031724.1-P	Field mustard	extracellular	66.99	40.58
Solyc05g005170.2.1	Tomato	nucleus	65.71	40.35
KRG99364	Soybean	extracellular, nucleus	69.55	40.33
KRH45648	Soybean	nucleus	69.55	40.33
PGSC0003DMT400035162	Potato	extracellular	66.03	40.31
CDY50367	Canola	extracellular, golgi	68.59	39.93
CDY47212	Canola	extracellular	68.59	39.93
CDY54228	Canola	extracellular, golgi, vacuole	67.31	39.77
Solyc07g015870.2.1	Tomato	extracellular	57.05	39.64
Bra027148.1-P	Field mustard	extracellular	67.95	39.55
PGSC0003DMT400077010	Potato	cytosol	58.01	39.09
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	66.35	38.98
CDY20962	Canola	extracellular, golgi, vacuole	66.35	38.98
CDY37962	Canola	extracellular, golgi, vacuole	66.35	38.91
AT1G60590.1	Thale cress	extracellular	67.31	38.89
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	66.35	38.84
CDX93397	Canola	extracellular, golgi, vacuole	66.35	38.84
CDY20612	Canola	extracellular	66.03	38.79
AT1G10640.1	Thale cress	extracellular, golgi	65.06	38.16
CDY34877	Canola	extracellular, golgi	58.33	37.22
Os05t0542800-02	Rice	extracellular	37.82	27.7
Os03t0808000-00	Rice	extracellular	37.18	25.11
Os03t0216800-01	Rice	extracellular	34.94	24.89
Os05t0542900-01	Rice	extracellular	33.97	23.82
Os02t0130200-01	Rice	extracellular, golgi	36.86	22.64
Os01t0329300-01	Rice	plastid	45.19	18.58
Os01t0172900-00	Rice	nucleus	13.78	14.58

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	ProteinID:BAF18328.1	ProteinID:BAS95499.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28
InterPro:IPR012334	EnsemblPlantsGene:Os05g0578600	EnsemblPlants:Os05t0578600-01	PFAM:PF00295	PANTHER:PTHR31375	PANTHER:PTHR31375:SF56
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	UniProt:Q0DFP5	SMART:SM00710	SUPFAM:SSF51126
UniParc:UPI0000E12602	SEG:seg	:	:	:	:

Description

Similar to Polygalacturonase PG2. (Os05t0578600-01)

Coordinates

chr5:-:28802278..28804210

Molecular Weight (calculated)

33918.0 Da

IEP (calculated)

5.766

GRAVY (calculated)

-0.211

Length

312 amino acids

Sequence
(BLAST)

001: SGISIQGSGV INGRGQEWWT YSDPNDDDND DVDAYNVELE KMPQIKPTAL RFYGSSNVTV TGITIVNSSQ CHLKFDSCQG VMVHDLTISS PENSPNTDGI
101: HLQNSKQVSI HHSNLACGDD CVSIQTGCSD INIHNVNCGP GHGISIGGLG RYNTKACVSN VTVRDVNMFK TMTGVRIKTW QGGSGLVQGI RFSNIQVSEV
201: QTPIIIDQFY CDRTTCRNQT SAVAVLGVQY ENIRGTFTIK PAHFACSDSS PCSEITLTGI QLKPLIVPQY HLYNPFCWQA FGELSTPTIP PISCLQIGKP
301: SGNNVMSDYD LC

Best Arabidopsis Sequence Match ( AT1G60590.1 )
(BLAST)

001: MITRESLTLR SITMMTLVTI LVWSATLETC IARRGRHWRH HHRSSSSLSD SLSSKKPKSH ENNHHHMSHK SKPKPKMKTQ PPKSNDGSPV VSQPPQVQQP
101: PPPHVQPPPT PLPLQPVEDS QQFNVLDFGA KGDGMSDDTQ AFEAAWASAC KVEASTMIIP PDYIFLVGPI SFSGPYCQAN IVFQLEGMIV APTDTESWGG
201: GLMWWIEFTK LSGITIQGNG VIDGRGTVWW QQDYLSDYPI DDDFKLIVPL NNSVQERPPM PIRSELNWRM PSIKPTALRF YGSIDVTVTG ITIQNSPQCH
301: LKFDNCVKVL VHDVNVSSPG DSPNTDGIHL QNTRDVMIHT TTLACGDDCI SIQTGCSNVY VHNVNCGPGH GISIGSLGKD STKACVSNIT VRDVVMHNTM
401: TGVRIKTWQG GIGSVKGILF SNIQLTEVQL PIVIDQFYCD HSKCMNHTSA VSVEGVTYEK IRGTYTVKPV HFACSDSFPC IDVQLSGIEL KPVQLQYHMY
501: DPFCWKTFGE LNSATVPPID CLQIGKPARN GVHSDHDICL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O22699]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.