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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi, extracellular, vacuole

Predictor Summary:
  • plastid 1
  • extracellular 5
  • endoplasmic reticulum 4
  • vacuole 5
  • plasma membrane 4
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, golgi, vacuole
Any Predictor:plastid, secretory
BaCelLo:plastid
iPSORT:secretory
MultiLoc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:golgi
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY34877 Canola extracellular, golgi 90.72 97.95
CDY37962 Canola extracellular, golgi, vacuole 91.1 90.41
CDX93397 Canola extracellular, golgi, vacuole 91.1 90.24
CDY20962 Canola extracellular, golgi, vacuole 90.34 89.83
CDY20612 Canola extracellular 89.96 89.45
AT1G10640.1 Thale cress extracellular, golgi 86.17 85.53
CDY47212 Canola extracellular 78.79 77.61
CDY50367 Canola extracellular, golgi 78.6 77.43
VIT_01s0127g00400.t01 Wine grape extracellular, mitochondrion, plastid 68.18 69.5
HORVU3Hr1G031180.1 Barley extracellular 18.37 68.79
Os05t0578600-01 Rice cytosol, extracellular 39.77 67.31
Solyc05g005170.2.1 Tomato nucleus 64.58 67.13
PGSC0003DMT400035162 Potato extracellular 64.96 67.12
KRH45648 Soybean nucleus 66.1 64.87
Os01t0637500-00 Rice cytosol, extracellular 41.48 64.79
KRG99364 Soybean extracellular, nucleus 65.91 64.68
GSMUA_Achr5P09080_001 Banana extracellular 57.39 62.22
GSMUA_Achr4P02960_001 Banana extracellular 55.87 62.11
GSMUA_Achr6P22080_001 Banana extracellular 57.01 62.06
CDX69569 Canola extracellular 50.0 60.14
CDY09873 Canola extracellular 50.0 60.14
HORVU3Hr1G056270.10 Barley extracellular 57.77 57.33
GSMUA_Achr1P27280_001 Banana extracellular 55.3 57.25
TraesCS3A01G225800.2 Wheat extracellular 58.33 57.14
EES01142 Sorghum extracellular 57.39 56.95
TraesCS1A01G418000.1 Wheat extracellular 54.92 56.86
TraesCS3D01G223900.1 Wheat extracellular 57.39 56.53
Zm00001d044110_P001 Maize extracellular 57.77 56.27
EES20001 Sorghum extracellular 57.2 56.24
Zm00001d011444_P002 Maize extracellular 57.58 56.19
TraesCS3B01G258600.2 Wheat extracellular 57.01 56.05
TraesCS1B01G448100.1 Wheat extracellular 56.25 56.04
Os01t0636500-01 Rice extracellular 56.63 55.58
TraesCS1D01G425600.1 Wheat extracellular 54.73 54.84
Zm00001d009667_P001 Maize extracellular, mitochondrion, plastid 53.03 54.26
HORVU1Hr1G091430.5 Barley extracellular 56.25 53.61
CDY67535 Canola extracellular 26.7 45.34
CDY13645 Canola extracellular 40.15 45.11
CDX83631 Canola extracellular 39.58 44.37
CDY43307 Canola extracellular 38.83 43.34
CDX93644 Canola extracellular 38.45 43.01
CDX95284 Canola extracellular 32.2 42.08
CDY41695 Canola extracellular 34.47 41.84
CDX77909 Canola extracellular 38.07 40.94
CDY15246 Canola extracellular 37.88 40.73
CDX89966 Canola extracellular 37.88 40.73
CDY57689 Canola extracellular 32.01 37.81
CDY54312 Canola extracellular 31.63 37.61
CDY56952 Canola extracellular 29.73 37.29
CDY04708 Canola plastid 19.51 37.18
CDX74418 Canola extracellular 29.55 36.97
CDY47032 Canola extracellular 27.65 36.23
CDY38648 Canola cytosol 25.57 36.1
CDX72553 Canola extracellular 27.46 35.98
CDY50769 Canola extracellular 23.3 35.96
CDY25786 Canola cytosol 30.3 35.87
CDY54292 Canola cytosol 30.3 35.87
CDY37571 Canola cytosol 25.38 35.83
CDY39399 Canola extracellular 27.08 35.75
CDY71357 Canola extracellular, vacuole 21.4 35.65
CDY39404 Canola extracellular 26.89 35.59
CDY69377 Canola extracellular 26.89 35.5
CDX67693 Canola extracellular 28.98 35.33
CDY47139 Canola extracellular 31.25 35.33
CDY11585 Canola extracellular 31.25 35.33
CDX72025 Canola extracellular 28.6 34.95
CDX73440 Canola extracellular 26.33 34.75
CDX79907 Canola extracellular 28.6 34.71
CDY35976 Canola extracellular 27.65 34.68
CDY48768 Canola extracellular 28.41 34.48
CDY07963 Canola extracellular 28.6 34.47
CDY28005 Canola extracellular 27.46 34.44
CDX74019 Canola extracellular 28.22 34.1
CDY14791 Canola extracellular 27.84 33.95
CDY06902 Canola extracellular 27.46 33.49
CDX85471 Canola extracellular 25.38 33.0
CDY44150 Canola extracellular, golgi, plastid 30.3 31.87
CDY02729 Canola extracellular 25.76 31.78
CDX97704 Canola extracellular 26.52 30.7
CDX75843 Canola extracellular 26.33 30.68
CDX97703 Canola extracellular 26.14 30.53
CDY30105 Canola extracellular 25.95 30.51
CDY30107 Canola extracellular 26.33 30.48
CDY58462 Canola extracellular 26.14 30.46
CDY16952 Canola extracellular 25.0 30.41
CDX68839 Canola cytosol 22.73 29.56
CDY41445 Canola endoplasmic reticulum 30.87 29.32
CDX75239 Canola cytosol 22.54 29.31
CDX69397 Canola extracellular 21.97 28.71
CDY61868 Canola extracellular 28.79 27.69
CDY39884 Canola extracellular 23.11 27.42
CDY06100 Canola extracellular 19.51 24.12
Protein Annotations
MapMan:50.3.2GO:A0A078IYP4UniProt:A0A078IYP4EnsemblPlants:CDY54228ProteinID:CDY54228ProteinID:CDY54228.1
GO:GO:0003674GO:GO:0003824GO:GO:0004650GO:GO:0005575GO:GO:0005576GO:GO:0005975
GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016043GO:GO:0016787GO:GO:0016798
GO:GO:0071555EnsemblPlantsGene:GSBRNA2T00013627001InterPro:Glyco_hydro_28PFAM:PF00295ScanProsite:PS00502PANTHER:PTHR31375
PANTHER:PTHR31375:SF58InterPro:PbH1InterPro:Pectin_lyase_fold/virulenceSMART:SM00710SUPFAM:SSF51126TMHMM:TMhelix
UniParc:UPI0004EDF48FSEG:seg::::
Description
BnaC08g49850DBnaC08g49850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IYP4]
Coordinates
chrLK033293:-:12034..14440
Molecular Weight (calculated)
58242.0 Da
IEP (calculated)
8.448
GRAVY (calculated)
-0.298
Length
528 amino acids
Sequence
(BLAST)
001: MIMRKNLRMG SITIIMLMAV LVWSITLETC IARRGRHWRQ NHRSSSDLSD SLLSKKPKSH SHHHSSHNNN HNHHHKSKPK PKPKLKTPPK SDHNKSPVVS
101: PPPKVQPPSL PPPKGSKVFN VMDFGAKGDG RCDDTKAFEA AWAAACKVEA SMMIIPPEYT FLVGPISFSG PYCQANIVFQ IDGTIIAPTD SKSWGKGLMW
201: WIDFTKLKGI KVQGKGVIDG RGSGWWQQDY PFIDGETKLI VPLNNSVPLP IRSEFDWKMP SIKPTALRFY GSVGVEVSGI TIQNSPQCHL KFDNCVDVLV
301: HDMAVSSPGD SPNTDGIHLQ NTRDVLIHSS TLACGDDCIS IQTGCSNVYI HNVNCGPGHG ISIGSLGKDS TKACVSNITV RDVAMHNTMT GVRIKTWQGG
401: VGSVKGILFS NIQLNEVQLP IVIDQFYCDH TTCKNQTSAV AVEGVTYEKI KGTYTVKPVH FACSDDFPCV DVQLSGIELK PVQERYHMYD PFCWQTFGEL
501: NSPTLPPIDC LQIGKPARNR VQSDHDVC
Best Arabidopsis Sequence Match ( AT1G10640.1 )
(BLAST)
001: MIMRRSLSLR SITMMILMAV LVWSVTLETC IARRGRHWRH SHRSSSDLSD SLSNKKPKSH GNSHHHSSHN NNHHHKSKPK PKPKLKTPPK AHDNNSPVVS
101: GPPKVQPPPL PPQKGSQVFN VMDFGAKGDG KCDDTKAFEA AWVAACKIEA SVMLVPPEYT YLVGPISFSG PYCQANIVFQ LDGTIIAPTD SKTWGKGLMW
201: WIDFTKLKGI KVQGKGVIDG RGSGWWQQDS PFIDSDTKLI VPLNNSANQN PPMPIRSELD ERMPSIKPTA LRFSGSFGVE VTGITIQNSP QCHLKFDDCV
301: GVVVHDIAVS SPGDSPNTDG IHLQNTKDVL IHSTTLACGD DCISIQTGCS NVFVHNVNCG PGHGISIGSL GKEGTKACVS NITVRDVAMH NTMTGVRIKT
401: WQGGVGSVKG IIFSNIQLNQ VQIPITINQF YCDHSKCKNQ TSAVAVEGVT YERIKGTYTV KPVHFACSDN FPCVDVQLSS IELKPVQEKY RMYDAYCWQT
501: FGELNTPTLP PIDCLKIGKP PRNKVQSDHD VC
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I5U6]
SUBAcon: [golgi,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.