Factsheet for TraesCS1B01G448100.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
extracellular 5
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G418000.1	Wheat	extracellular	91.51	95.1
TraesCS1D01G425600.1	Wheat	extracellular	94.34	94.88
HORVU1Hr1G091430.5	Barley	extracellular	93.58	89.53
Os05t0578600-01	Rice	cytosol, extracellular	51.13	86.86
EES20001	Sorghum	extracellular	76.79	75.79
TraesCS3B01G258600.2	Wheat	extracellular	71.7	70.76
Zm00001d009667_P001	Maize	extracellular, mitochondrion, plastid	64.91	66.67
GSMUA_Achr6P22080_001	Banana	extracellular	60.38	65.98
GSMUA_Achr5P09080_001	Banana	extracellular	60.57	65.91
GSMUA_Achr4P02960_001	Banana	extracellular	58.68	65.47
GSMUA_Achr1P27280_001	Banana	extracellular	58.87	61.18
VIT_01s0127g00400.t01	Wine grape	extracellular, mitochondrion, plastid	58.3	59.65
CDX69569	Canola	extracellular	48.11	58.09
CDY09873	Canola	extracellular	48.11	58.09
Solyc05g005170.2.1	Tomato	nucleus	55.47	57.87
Bra008748.1-P	Field mustard	extracellular	47.92	57.86
KRG93260	Soybean	extracellular	48.11	57.56
PGSC0003DMT400035162	Potato	extracellular	55.47	57.53
Bra031724.1-P	Field mustard	extracellular	55.85	57.48
KRH45648	Soybean	nucleus	58.3	57.43
KRH56581	Soybean	extracellular	47.36	57.18
CDY37962	Canola	extracellular, golgi, vacuole	57.36	57.14
KRG99364	Soybean	extracellular, nucleus	57.92	57.06
AT5G14650.1	Thale cress	extracellular	46.79	57.01
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	57.17	56.85
CDX93397	Canola	extracellular, golgi, vacuole	57.17	56.85
VIT_14s0066g01060.t01	Wine grape	extracellular	51.51	56.52
CDY54228	Canola	extracellular, golgi, vacuole	56.04	56.25
CDY50367	Canola	extracellular, golgi	56.79	56.16
CDY20612	Canola	extracellular	56.04	55.93
CDY47212	Canola	extracellular	56.42	55.78
Bra027148.1-P	Field mustard	extracellular	56.42	55.78
CDY20962	Canola	extracellular, golgi, vacuole	55.85	55.74
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	55.47	55.37
AT1G60590.1	Thale cress	extracellular	56.04	55.0
AT1G10640.1	Thale cress	extracellular, golgi	55.09	54.89
CDY34877	Canola	extracellular, golgi	50.57	54.81
Solyc07g015870.2.1	Tomato	extracellular	46.42	54.79
PGSC0003DMT400077010	Potato	cytosol	46.04	52.7
TraesCS7B01G230600.1	Wheat	extracellular	38.49	41.89
TraesCS1B01G322500.1	Wheat	extracellular	38.11	41.74
TraesCS5B01G468700.1	Wheat	extracellular	31.13	40.24
TraesCS5B01G469000.1	Wheat	extracellular	30.75	40.15
TraesCS5B01G468900.1	Wheat	extracellular	30.57	38.66
TraesCS2B01G423300.1	Wheat	extracellular	28.3	37.41
TraesCS2B01G423400.1	Wheat	plastid	24.72	37.32
TraesCS2B01G423200.1	Wheat	extracellular	29.81	37.18
TraesCS3B01G148500.1	Wheat	extracellular	28.11	37.16
TraesCS1B01G083700.1	Wheat	extracellular	21.13	37.09
TraesCS7B01G067800.1	Wheat	extracellular	29.25	36.9
TraesCS1B01G382200.2	Wheat	extracellular	28.68	36.72
TraesCS3B01G148600.1	Wheat	extracellular	27.74	35.68
TraesCS1B01G142700.1	Wheat	plastid	29.43	35.45
TraesCS4B01G244300.1	Wheat	extracellular	26.98	33.03
TraesCS3B01G020300.1	Wheat	extracellular	26.79	32.05
TraesCS1B01G382700.1	Wheat	extracellular	25.28	31.98
TraesCS1B01G382800.1	Wheat	extracellular	26.04	31.8
TraesCS6B01G118000.2	Wheat	extracellular, golgi, vacuole	29.62	29.73

Protein Annotations

EnsemblPlants:TraesCS1B01G448100.1	EnsemblPlantsGene:TraesCS1B01G448100	Gene3D:2.160.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31375	PANTHER:PTHR31375:SF56	PFAM:PF00295
SEG:seg	SignalP:SignalP-noTM	SMART:SM00710	SUPFAM:SSF51126	MapMan:21.3.5.1.3	:

Description

No Description!

Coordinates

chr1B:-:667491123..667494420

Molecular Weight (calculated)

56508.7 Da

IEP (calculated)

7.143

GRAVY (calculated)

-0.314

Length

530 amino acids

Sequence
(BLAST)

001: MSKGLAVLLL LVSLALSSGV GFCDARSGKH WRQNRGPSSS SMFRRKGKGK NGGGSPSHSH RQYGKGRQSP AMPAPPSPGG GHGYASPSPP PPSLPPQAPS
101: VPRSPPPPLP PSLPPQAPPS DEPSQGTVFN VVAFGARGDG VTDDTQAFEA AWAAACKVEA STVLVPPELE FVVGPISFSG PNCKPNILFQ LDGTISAKTG
201: ARAWGSGLLQ WLEFTKLNGI SIQGSGVING QGKEWWTYSD SNDDDDDMDS YTDQELEKMP QIKPTALRFY GSSDVRVTGI SIINSPQCHL KFDSCQGVMV
301: HNLTISSPEN SPNTDGIHLQ NSKDVNIHHT DLACGDDCIS IQTGCSDVNI HNVNCGPGHG ISIGGLGRYN TKACVSNITV RDVNMFKTMT GVRIKTWQGG
401: SGLVQGIRFS NIHMSEVQTP IMIDQFYCDK TSCTNQTSAV AVSGVQYENI RGTFTIKPAH FACSDSSPCS EITLTGIQLR PLVVPQYHTC SSPFCWQAFG
501: ELYTPTIPPI SCLQLGKPAG NRVLSDHDQC

Best Arabidopsis Sequence Match ( AT1G10640.1 )
(BLAST)

001: MIMRRSLSLR SITMMILMAV LVWSVTLETC IARRGRHWRH SHRSSSDLSD SLSNKKPKSH GNSHHHSSHN NNHHHKSKPK PKPKLKTPPK AHDNNSPVVS
101: GPPKVQPPPL PPQKGSQVFN VMDFGAKGDG KCDDTKAFEA AWVAACKIEA SVMLVPPEYT YLVGPISFSG PYCQANIVFQ LDGTIIAPTD SKTWGKGLMW
201: WIDFTKLKGI KVQGKGVIDG RGSGWWQQDS PFIDSDTKLI VPLNNSANQN PPMPIRSELD ERMPSIKPTA LRFSGSFGVE VTGITIQNSP QCHLKFDDCV
301: GVVVHDIAVS SPGDSPNTDG IHLQNTKDVL IHSTTLACGD DCISIQTGCS NVFVHNVNCG PGHGISIGSL GKEGTKACVS NITVRDVAMH NTMTGVRIKT
401: WQGGVGSVKG IIFSNIQLNQ VQIPITINQF YCDHSKCKNQ TSAVAVEGVT YERIKGTYTV KPVHFACSDN FPCVDVQLSS IELKPVQEKY RMYDAYCWQT
501: FGELNTPTLP PIDCLKIGKP PRNKVQSDHD VC

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I5U6]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.