Factsheet for VIT_01s0127g00400.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, extracellular

Predictor Summary:

plastid 4
extracellular 3
plasma membrane 2
endoplasmic reticulum 1
vacuole 1
golgi 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion, plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g005170.2.1	Tomato	nucleus	71.43	72.83
PGSC0003DMT400035162	Potato	extracellular	71.04	72.02
KRG99364	Soybean	extracellular, nucleus	73.36	70.63
KRH45648	Soybean	nucleus	73.17	70.45
Os05t0578600-01	Rice	cytosol, extracellular	42.08	69.87
CDY37962	Canola	extracellular, golgi, vacuole	71.43	69.55
Bra031724.1-P	Field mustard	extracellular	68.92	69.32
Os01t0637500-00	Rice	cytosol, extracellular	45.17	69.23
HORVU3Hr1G031180.1	Barley	extracellular	18.73	68.79
CDX93397	Canola	extracellular, golgi, vacuole	70.66	68.67
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	70.66	68.67
GSMUA_Achr6P22080_001	Banana	extracellular	64.29	68.66
GSMUA_Achr4P02960_001	Banana	extracellular	62.93	68.63
CDY54228	Canola	extracellular, golgi, vacuole	69.5	68.18
GSMUA_Achr5P09080_001	Banana	extracellular	63.71	67.76
CDY34877	Canola	extracellular, golgi	63.71	67.48
AT1G10640.1	Thale cress	extracellular, golgi	69.11	67.29
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	68.53	66.86
CDY50367	Canola	extracellular, golgi	69.11	66.79
CDY47212	Canola	extracellular	69.11	66.79
CDY20962	Canola	extracellular, golgi, vacuole	68.34	66.67
CDY20612	Canola	extracellular	68.34	66.67
Bra027148.1-P	Field mustard	extracellular	68.53	66.23
AT1G60590.1	Thale cress	extracellular	68.73	65.93
GSMUA_Achr1P27280_001	Banana	extracellular	61.97	62.94
VIT_14s0066g01060.t01	Wine grape	extracellular	58.11	62.32
HORVU3Hr1G056270.10	Barley	extracellular	61.78	60.15
TraesCS1A01G418000.1	Wheat	extracellular	58.69	59.61
TraesCS3A01G225800.2	Wheat	extracellular	61.78	59.37
EES20001	Sorghum	extracellular	61.2	59.03
TraesCS3D01G223900.1	Wheat	extracellular	61.0	58.96
TraesCS3B01G258600.2	Wheat	extracellular	60.81	58.66
Os01t0636500-01	Rice	extracellular	60.81	58.55
EES01142	Sorghum	extracellular	60.04	58.46
TraesCS1B01G448100.1	Wheat	extracellular	59.65	58.3
TraesCS1D01G425600.1	Wheat	extracellular	58.69	57.69
Zm00001d044110_P001	Maize	extracellular	59.65	57.01
Zm00001d011444_P002	Maize	extracellular	59.46	56.93
HORVU1Hr1G091430.5	Barley	extracellular	59.85	55.96
Zm00001d009667_P001	Maize	extracellular, mitochondrion, plastid	54.25	54.46
VIT_01s0127g00120.t01	Wine grape	extracellular	44.4	48.02
VIT_14s0060g00620.t01	Wine grape	extracellular	38.42	42.89
VIT_07s0005g02090.t01	Wine grape	extracellular	38.42	42.8
VIT_05s0020g00420.t01	Wine grape	extracellular	39.38	42.77
VIT_13s0064g00760.t01	Wine grape	cytosol	24.9	38.86
VIT_17s0000g05670.t01	Wine grape	extracellular	28.76	37.91
VIT_09s0096g00850.t01	Wine grape	cytoskeleton, cytosol, peroxisome	27.03	37.74
VIT_09s0002g06610.t01	Wine grape	extracellular	28.19	37.53
VIT_09s0002g06380.t01	Wine grape	cytosol	29.92	37.44
VIT_17s0000g05660.t01	Wine grape	extracellular	27.41	36.69
VIT_08s0007g07760.t01	Wine grape	extracellular	30.5	36.32
VIT_09s0002g06580.t01	Wine grape	cytosol	27.41	36.32
VIT_08s0007g08330.t01	Wine grape	extracellular	30.7	35.81
VIT_08s0007g07750.t01	Wine grape	extracellular	30.12	35.29
VIT_08s0007g07780.t01	Wine grape	extracellular	29.34	35.02
VIT_08s0007g07770.t01	Wine grape	extracellular	29.54	34.62
VIT_09s0002g06650.t01	Wine grape	extracellular	26.64	34.16
VIT_13s0064g00750.t01	Wine grape	cytosol	29.73	33.77

Protein Annotations

EntrezGene:100241353	wikigene:100241353	MapMan:50.3.2	EMBL:AM449009	ProteinID:CAN65317	ProteinID:CAN65317.1
ProteinID:CCB51795	ProteinID:CCB51795.1	UniProt:F6HHV8	EMBL:FN595761	GO:GO:0003674	GO:GO:0003824
GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28
EntrezGene:LOC100241353	wikigene:LOC100241353	PFAM:PF00295	PANTHER:PTHR31375	PANTHER:PTHR31375:SF58	InterPro:PbH1
InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	TMHMM:TMhelix	UniParc:UPI00021084B5	ArrayExpress:VIT_01s0127g00400
EnsemblPlantsGene:VIT_01s0127g00400	EnsemblPlants:VIT_01s0127g00400.t01	RefSeq:XP_002266600	RefSeq:XP_002266600.1	SEG:seg	:

Description

No Description!

Coordinates

chr1:+:7734619..7740500

Molecular Weight (calculated)

56321.1 Da

IEP (calculated)

8.215

GRAVY (calculated)

-0.238

Length

518 amino acids

Sequence
(BLAST)

001: MWSSFYRIHS NIMMSGLSFR RLAFMLLFAF LVWSSSTGTC HARRGKHWRH SRAASASLSK KKAKSHGSGS HHHGGSKSKP KAPSPPKQEV TPPPPEKKGS
101: ETFNVLDFGA KGDGDTDDTK AFQSAWASAC KVEASTIVVP SEYVFLVGPI SFSGPYCEAN IVFQLDGTII APTNAKAWGS GLLWWIEFTK LRGITIRGNG
201: VIDGKGSVWW QDSPFDDPVD DEAKLIIPLN RTAKENSPIP INSKLGSKMP STKPTALRFY GSFNVTVTGI TIQNSPQCHL KFDNCMGVSV YEMSVSSPGD
301: SVNTDGIHLQ NSKDVLIHAT NLACGDDCVS IQTGCSNVYI HNVNCGPGHG ISIGGLGRDG TKACVSNITV RDIIMHNTMN GVRIKTWQGG SGSVQGVLFS
401: NIQVSEVELP IVIDQFYCDK GKCKNQTSAV ALSGITYEKI KGTYTVKPVH FACSDNLPCM DVTLTGIELK PLQERYHMYD PFCWQTFGEL TTPTVPPIDC
501: LQIGKPSSNR IQSDHDSC

Best Arabidopsis Sequence Match ( AT1G60590.1 )
(BLAST)

001: MITRESLTLR SITMMTLVTI LVWSATLETC IARRGRHWRH HHRSSSSLSD SLSSKKPKSH ENNHHHMSHK SKPKPKMKTQ PPKSNDGSPV VSQPPQVQQP
101: PPPHVQPPPT PLPLQPVEDS QQFNVLDFGA KGDGMSDDTQ AFEAAWASAC KVEASTMIIP PDYIFLVGPI SFSGPYCQAN IVFQLEGMIV APTDTESWGG
201: GLMWWIEFTK LSGITIQGNG VIDGRGTVWW QQDYLSDYPI DDDFKLIVPL NNSVQERPPM PIRSELNWRM PSIKPTALRF YGSIDVTVTG ITIQNSPQCH
301: LKFDNCVKVL VHDVNVSSPG DSPNTDGIHL QNTRDVMIHT TTLACGDDCI SIQTGCSNVY VHNVNCGPGH GISIGSLGKD STKACVSNIT VRDVVMHNTM
401: TGVRIKTWQG GIGSVKGILF SNIQLTEVQL PIVIDQFYCD HSKCMNHTSA VSVEGVTYEK IRGTYTVKPV HFACSDSFPC IDVQLSGIEL KPVQLQYHMY
501: DPFCWKTFGE LNSATVPPID CLQIGKPARN GVHSDHDICL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O22699]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.