Factsheet for VIT_08s0007g07760.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g07750.t01	Wine grape	extracellular	96.78	95.25
VIT_08s0007g07770.t01	Wine grape	extracellular	94.71	93.21
VIT_08s0007g07780.t01	Wine grape	extracellular	91.26	91.47
VIT_08s0007g08330.t01	Wine grape	extracellular	83.91	82.21
Solyc04g015530.1.1	Tomato	cytosol	53.1	58.93
KRH71979	Soybean	extracellular	57.7	58.64
VIT_13s0064g00760.t01	Wine grape	cytosol	43.68	57.23
AT2G41850.1	Thale cress	extracellular	54.25	54.5
Bra004655.1-P	Field mustard	extracellular	53.33	54.21
KRH66955	Soybean	extracellular	57.7	54.09
AT3G57510.1	Thale cress	extracellular	52.87	53.36
CDY14791	Canola	extracellular	53.1	53.35
CDY48768	Canola	extracellular	53.33	53.33
CDX79907	Canola	extracellular	53.33	53.33
KRH33163	Soybean	extracellular, plastid	58.39	53.25
Bra016911.1-P	Field mustard	extracellular	52.87	53.12
CDY06902	Canola	extracellular	52.64	52.89
PGSC0003DMT400070039	Potato	cytosol	49.66	52.68
CDX72025	Canola	extracellular	52.18	52.55
CDX67693	Canola	extracellular	52.18	52.42
Bra003286.1-P	Field mustard	extracellular	52.18	52.42
Bra007332.1-P	Field mustard	extracellular	51.26	51.62
VIT_13s0064g00750.t01	Wine grape	cytosol	54.02	51.54
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus	46.9	51.39
Bra016912.1-P	Field mustard	extracellular, nucleus, peroxisome	52.18	50.67
Solyc10g080210.1.1	Tomato	extracellular	52.87	50.33
KRG95273	Soybean	extracellular	57.7	47.99
HORVU0Hr1G038940.1	Barley	cytosol	43.91	47.28
GSMUA_Achr1P22940_001	Banana	extracellular	45.52	44.9
TraesCS4A01G066700.1	Wheat	extracellular	44.6	44.8
Os03t0216800-01	Rice	extracellular	45.06	44.75
KXG39856	Sorghum	extracellular	44.14	44.65
TraesCS4B01G244300.1	Wheat	extracellular	44.14	44.34
TraesCS4D01G243600.1	Wheat	extracellular	43.91	44.11
VIT_09s0002g06380.t01	Wine grape	cytosol	38.16	40.1
CDY61868	Canola	extracellular	50.57	40.07
VIT_09s0096g00850.t01	Wine grape	cytoskeleton, cytosol, peroxisome	34.02	39.89
Zm00001d048079_P001	Maize	extracellular	42.3	39.83
VIT_09s0002g06650.t01	Wine grape	extracellular	36.78	39.6
VIT_17s0000g05670.t01	Wine grape	extracellular	34.25	37.91
VIT_09s0002g06610.t01	Wine grape	extracellular	33.33	37.28
CDY06100	Canola	extracellular	36.32	37.0
VIT_17s0000g05660.t01	Wine grape	extracellular	32.87	36.95
VIT_09s0002g06580.t01	Wine grape	cytosol	32.64	36.32
VIT_14s0060g00620.t01	Wine grape	extracellular	37.7	35.34
VIT_07s0005g02090.t01	Wine grape	extracellular	37.24	34.84
VIT_14s0066g01060.t01	Wine grape	extracellular	38.39	34.58
VIT_05s0020g00420.t01	Wine grape	extracellular	36.55	33.33
VIT_01s0127g00120.t01	Wine grape	extracellular	34.25	31.11
VIT_01s0127g00400.t01	Wine grape	extracellular, mitochondrion, plastid	36.32	30.5

Protein Annotations

Gene3D:2.160.20.10	MapMan:21.3.5.1.1	ProteinID:CCB55177	ProteinID:CCB55177.1	UniProt:F6HL70	EMBL:FN595991
GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	PFAM:PF00295
ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF3	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence
SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002109B56	ArrayExpress:VIT_08s0007g07760
EnsemblPlantsGene:VIT_08s0007g07760	EnsemblPlants:VIT_08s0007g07760.t01	RefSeq:XP_002282759	RefSeq:XP_002282759.1	SEG:seg	:

Description

No Description!

Coordinates

chr8:-:21207969..21210548

Molecular Weight (calculated)

46734.1 Da

IEP (calculated)

8.187

GRAVY (calculated)

-0.303

Length

435 amino acids

Sequence
(BLAST)

001: MSLKRRFIPF LIVFLLSFPC YYGLQGNPPY DYLDDAYGYD SSRAYEKWPW RKFGSKIMGS KRIGKVGRSL ASVKTVSVND YGAKGDGSDA TEAFKKAWEA
101: ACSSQGSVLV VPQTKNYLLK PITFQGPCKS SITVQIYGTV QASADRSAYS NDMTRWLVFE NVQNLAVQGG GTINGNGKTW WENSCKVNDD LALTFYNCKN
201: LVVKNLKIQN AQQMHVSFEK CVGVQASGLT VTAPGDSPNT DGIHVTDTQN IQISSSVLGT GDDCISIVSG TQNLQATGIT CGPGHGISIG SLGSGNSEAH
301: VSDITVNGAT LSGTTNGVRI KTWQGGSGSA SNIKFQNIEM HNVKNPIIID QKYCDQDKPC KSQSRAVQVQ NVLYQNIKGT SSSNEAIQLD CSDKFPCQGV
401: VLQDIDIEIG GGRATKAVCN NAKVTEKGDV SPSCT

Best Arabidopsis Sequence Match ( AT3G57510.1 )
(BLAST)

001: MARCCRHLAV FLCVLLMLSL CKALSSNVDD GYGHEDGSFE SDSLLKLNND DVLSLISSDE TTLEASTVSV SNFGAKGDGK TDDTQAFKKA WKKACSTNGV
101: TTFLVPKGKT YLLKSTRFRG PCKSLRNFQI LGTLSASTKR SDYKDKNHWL ILEDVNNLSI DGGSTGIING NGKTWWQNSC KIDKSKPCTK APTALTLYNL
201: KNLNVKNLRV KNAQQIQISI EKCNKVEVSN VEITAPGDSP NTDGIHITNT QNIRVSNSDI GTGDDCISIE DGTQNLQIFD LTCGPGHGIS IGSLGDDNSK
301: AYVSGINVDG AKFSESDNGV RIKTYQGGSG TAKNIKFQNI RMENVKNPII IDQDYCDKDK CEDQESAVQV KNVVYKNISG TSATDVAITL NCSEKYPCQG
401: IVLENVKIKG GTASCKNANV KNQGTVSPKC S

Arabidopsis Description

ADPG1Polygalacturonase ADPG1 [Source:UniProtKB/Swiss-Prot;Acc:O23147]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.