Factsheet for Bra003286.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 9
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67693	Canola	extracellular	100.0	100.0
AT3G57510.1	Thale cress	extracellular	87.07	87.47
Bra007332.1-P	Field mustard	extracellular	86.14	86.34
Bra004655.1-P	Field mustard	extracellular	66.51	67.29
Bra016911.1-P	Field mustard	extracellular	67.21	67.21
Bra016912.1-P	Field mustard	extracellular, nucleus, peroxisome	65.36	63.17
Solyc04g015530.1.1	Tomato	cytosol	49.19	54.34
KRH71979	Soybean	extracellular	53.12	53.74
VIT_08s0007g08330.t01	Wine grape	extracellular	54.27	52.93
VIT_08s0007g07750.t01	Wine grape	extracellular	53.58	52.49
VIT_08s0007g07760.t01	Wine grape	extracellular	52.42	52.18
VIT_08s0007g07780.t01	Wine grape	extracellular	52.19	52.07
VIT_08s0007g07770.t01	Wine grape	extracellular	52.89	51.81
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus	46.65	50.88
Bra029690.1-P	Field mustard	cytosol	46.65	49.75
KRH33163	Soybean	extracellular, plastid	52.19	47.38
Bra001279.1-P	Field mustard	extracellular	47.81	47.37
KRH66955	Soybean	extracellular	50.58	47.2
PGSC0003DMT400070039	Potato	cytosol	44.34	46.83
Solyc10g080210.1.1	Tomato	extracellular	48.96	46.39
HORVU0Hr1G038940.1	Barley	cytosol	40.42	43.32
KXG39856	Sorghum	extracellular	42.26	42.56
KRG95273	Soybean	extracellular	51.04	42.26
TraesCS4B01G244300.1	Wheat	extracellular	41.8	41.8
TraesCS4D01G243600.1	Wheat	extracellular	41.57	41.57
TraesCS4A01G066700.1	Wheat	extracellular	41.34	41.34
Os03t0216800-01	Rice	extracellular	41.57	41.1
GSMUA_Achr1P22940_001	Banana	extracellular	41.11	40.36
Zm00001d048079_P001	Maize	extracellular	42.26	39.61
Bra027926.1-P	Field mustard	extracellular	38.57	38.39
Bra024602.1-P	Field mustard	cytosol	38.8	38.01
Bra003555.1-P	Field mustard	extracellular	39.03	37.81
Bra016213.1-P	Field mustard	extracellular	40.42	37.47
Bra023600.1-P	Field mustard	extracellular	36.72	37.15
Bra012375.1-P	Field mustard	cytosol	38.11	37.0
Bra008748.1-P	Field mustard	extracellular	37.18	36.67
Bra016345.1-P	Field mustard	extracellular	39.49	36.54
Bra025099.1-P	Field mustard	extracellular	33.72	36.5
Bra008493.1-P	Field mustard	extracellular	32.79	36.41
Bra008572.1-P	Field mustard	extracellular	36.49	36.41
Bra025631.1-P	Field mustard	extracellular	35.33	36.26
Bra025103.1-P	Field mustard	extracellular	33.49	36.25
Bra027211.1-P	Field mustard	extracellular	36.95	35.48
Bra027210.1-P	Field mustard	extracellular	35.8	33.99
Bra000911.1-P	Field mustard	extracellular, vacuole	38.11	33.95
Bra001605.1-P	Field mustard	extracellular	35.33	33.85
Bra033328.1-P	Field mustard	extracellular	38.34	33.81
Bra032600.1-P	Field mustard	extracellular	37.88	33.4
Bra018707.1-P	Field mustard	extracellular	36.26	33.26
Bra025216.1-P	Field mustard	extracellular	35.57	32.77
Bra011341.1-P	Field mustard	cytosol	29.56	32.57
Bra031724.1-P	Field mustard	extracellular	35.33	29.71
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	35.57	29.0
Bra027148.1-P	Field mustard	extracellular	35.57	28.73
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	35.33	28.71
Bra040077.1-P	Field mustard	extracellular	24.02	28.49

Protein Annotations

Gene3D:2.160.20.10	MapMan:21.3.5.1.1	EnsemblPlantsGene:Bra003286	EnsemblPlants:Bra003286.1	EnsemblPlants:Bra003286.1-P	GO:GO:0000003
GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009791	GO:GO:0009901	GO:GO:0009908
GO:GO:0009987	GO:GO:0010047	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4CGF3	PFAM:PF00295	ScanProsite:PS00502	PFscan:PS51257
PANTHER:PTHR31375	PANTHER:PTHR31375:SF3	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710
SUPFAM:SSF51126	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000002E0EA	SEG:seg	:

Description

AT3G57510 (E=9e-210) ADPG1 | ADPG1; polygalacturonase

Coordinates

chrA07:-:12382282..12384603

Molecular Weight (calculated)

46673.1 Da

IEP (calculated)

8.087

GRAVY (calculated)

-0.397

Length

433 amino acids

Sequence
(BLAST)

001: MARCHGSLAI FLCVLLMLAC CQALSSNVDD GYGHEDGSFE TDSLIKLNND DDVLTLKSSD RPTTESSTVS VSNFGAKGDG KTDDTQAFKK AWKKACSTNG
101: VTTFLIPKGK TYLLKSIRFR GPCKSLRSFQ ILGTLSASTK RSDYSNDKNH WLILEDVNNL SIDGGSAGIV DGNGKIWWQN SCKIDKSKPC TKAPTALTLY
201: NLNNLNVKNL RVRNAQQIQI SIEKCNSVDV KNVKITAPGD SPNTDGIHIV ATKNIRISNS DIGTGDDCIS IEDGSQNVQI NDLTCGPGHG ISIGSLGDDN
301: SKAYVSGINV DGATLSETDN GVRIKTYQGG SGTAKNIKFQ NIRMDNVKNP IIIDQNYCDK DKCEQQESAV QVNNVVYRNI QGTSATDVAI MFNCSVKYPC
401: QGIVLENVNI KGGKASCKNV NVKDKGTVSP KCP

Best Arabidopsis Sequence Match ( AT3G57510.1 )
(BLAST)

001: MARCCRHLAV FLCVLLMLSL CKALSSNVDD GYGHEDGSFE SDSLLKLNND DVLSLISSDE TTLEASTVSV SNFGAKGDGK TDDTQAFKKA WKKACSTNGV
101: TTFLVPKGKT YLLKSTRFRG PCKSLRNFQI LGTLSASTKR SDYKDKNHWL ILEDVNNLSI DGGSTGIING NGKTWWQNSC KIDKSKPCTK APTALTLYNL
201: KNLNVKNLRV KNAQQIQISI EKCNKVEVSN VEITAPGDSP NTDGIHITNT QNIRVSNSDI GTGDDCISIE DGTQNLQIFD LTCGPGHGIS IGSLGDDNSK
301: AYVSGINVDG AKFSESDNGV RIKTYQGGSG TAKNIKFQNI RMENVKNPII IDQDYCDKDK CEDQESAVQV KNVVYKNISG TSATDVAITL NCSEKYPCQG
401: IVLENVKIKG GTASCKNANV KNQGTVSPKC S

Arabidopsis Description

ADPG1Polygalacturonase ADPG1 [Source:UniProtKB/Swiss-Prot;Acc:O23147]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.