Factsheet for Bra008572.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69397	Canola	extracellular	87.1	93.56
Bra023600.1-P	Field mustard	extracellular	73.5	74.53
AT5G17200.1	Thale cress	extracellular	66.82	68.88
PGSC0003DMT400056828	Potato	extracellular	39.17	42.71
Bra025099.1-P	Field mustard	extracellular	39.17	42.5
PGSC0003DMT400008955	Potato	extracellular	33.18	41.38
Bra025103.1-P	Field mustard	extracellular	37.79	41.0
Bra007332.1-P	Field mustard	extracellular	38.02	38.19
Bra027210.1-P	Field mustard	extracellular	39.86	37.94
Bra011341.1-P	Field mustard	cytosol	34.33	37.91
TraesCS2B01G423400.1	Wheat	plastid	30.65	37.89
Bra004655.1-P	Field mustard	extracellular	37.33	37.85
TraesCS2D01G402300.1	Wheat	extracellular	29.03	37.84
Bra001605.1-P	Field mustard	extracellular	39.4	37.83
TraesCS2D01G402200.1	Wheat	extracellular	33.87	37.6
TraesCS2D01G402100.1	Wheat	extracellular	35.02	37.53
TraesCS2B01G423300.1	Wheat	extracellular	34.56	37.41
TraesCS2A01G405600.1	Wheat	extracellular	27.42	37.3
Bra027211.1-P	Field mustard	extracellular	38.71	37.25
GSMUA_Achr9P22320_001	Banana	extracellular	35.25	37.05
TraesCS2A01G405300.1	Wheat	extracellular, nucleus	34.56	37.04
Bra016911.1-P	Field mustard	extracellular	36.87	36.95
KXG26899	Sorghum	extracellular	35.71	36.9
GSMUA_Achr11P...	Banana	extracellular	35.25	36.78
Bra003286.1-P	Field mustard	extracellular	36.41	36.49
Bra029690.1-P	Field mustard	cytosol	34.1	36.45
TraesCS2A01G405100.1	Wheat	extracellular	35.02	36.45
Bra025631.1-P	Field mustard	extracellular	35.25	36.26
GSMUA_Achr4P13200_001	Banana	extracellular	35.25	36.26
HORVU2Hr1G096130.1	Barley	extracellular	33.41	35.8
Bra001279.1-P	Field mustard	extracellular	35.48	35.24
Bra016912.1-P	Field mustard	extracellular, nucleus, peroxisome	35.94	34.82
Bra008493.1-P	Field mustard	extracellular	31.11	34.62
TraesCS2B01G423200.1	Wheat	extracellular	33.87	34.59
TraesCS2D01G402000.1	Wheat	extracellular	34.1	34.58
Bra003555.1-P	Field mustard	extracellular	32.03	31.1
Bra027926.1-P	Field mustard	extracellular	31.11	31.03
Bra040077.1-P	Field mustard	extracellular	26.04	30.96
Bra024602.1-P	Field mustard	cytosol	30.88	30.32
Bra008748.1-P	Field mustard	extracellular	30.65	30.3
Zm00001d039668_P001	Maize	plastid	29.72	29.52
Bra012375.1-P	Field mustard	cytosol	29.95	29.15
Bra016213.1-P	Field mustard	extracellular	31.34	29.12
Bra016345.1-P	Field mustard	extracellular	31.11	28.85
Bra000911.1-P	Field mustard	extracellular, vacuole	32.03	28.6
Bra032600.1-P	Field mustard	extracellular	31.57	27.9
Bra033328.1-P	Field mustard	extracellular	31.34	27.7
Bra018707.1-P	Field mustard	extracellular	29.49	27.12
Bra025216.1-P	Field mustard	extracellular	28.8	26.6
Os01t0172900-00	Rice	nucleus	17.28	25.42
Bra031724.1-P	Field mustard	extracellular	29.95	25.24
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	30.41	24.86
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	29.49	24.02
Bra027148.1-P	Field mustard	extracellular	28.11	22.76
GSMUA_Achr4P06370_001	Banana	extracellular	34.56	19.89

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EnsemblPlantsGene:Bra008572	EnsemblPlants:Bra008572.1	EnsemblPlants:Bra008572.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4CWH5	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375
PANTHER:PTHR31375:SF42	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126
SignalP:SignalP-noTM	UniParc:UPI00025446A4	SEG:seg	:	:	:

Description

AT5G17200 (E=1e-158) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Coordinates

chrA10:+:12877852..12880212

Molecular Weight (calculated)

46794.4 Da

IEP (calculated)

8.278

GRAVY (calculated)

-0.205

Length

434 amino acids

Sequence
(BLAST)

001: MKKSSLFFVL LCLFQISKLD FCLAGSVHMV NNNGHERHRF ISVTDFGAVC DGKTDDTQAF LKAWEAVCNG FSNKSFLVPL GKTCMLKPLT FAGPCTSSSI
101: TFVIRGNIVA PGYTWNVGNF PAWISFDSIN GLVVKGGGVK GGGTLDSRGS VWGGSEHAQD KESPTAMHFN NCNGLRMYNL QHLNSPRNHI GLTGSKNISI
201: SGLNLTAPGD SPNTDGIDIS RCIGVDIRDS VISTGDDCIA INSGSSYINI TGLFCGPGHG ISVGSLGRNG EFASVEEVRV KNCTLSNTMN GVRIKTYQNG
301: LGYARKISFE DIRMVDSKNP IIIEQNYLNR GKIEEVSFEN SNYQNRGGKN RFYKTESGNG RGVKVSDVRY SRIYGSSASD DAVTFNCNAD LGCEDIVMDH
401: VDIVSAKAGH AVSASCKNVR GSYFSSPVSC IKKH

Best Arabidopsis Sequence Match ( AT5G17200.1 )
(BLAST)

001: MKSSLFFVLL CLFQINKLCF CLEEESLKVK NGFGSNGFIS VTSFGAIGDG KTDDTKAFLK AWEAVCKGGH NRKILVPQGK TFMLKPLTFI GPCKSSTISL
101: SIRGNLVAPG YTWYAGRYTT WISFDSINGL VVTGGGTIDG RGSLWWGNVN NRPCAMHFNN CNGLRISNLR HLNSPRNHVG LSCSQNIEVR GLRMTAPGDS
201: PNTDGIDISN CIGVHIHDSV IATGDDCIAI NSGSSHINIT GIFCGPGHGI SVGSLGVTGD FETVEEVRVK NCTFTKTQNG VRIKTYQNGS GYARKISFED
301: INMVASENPI IIDQTYHNGG TNGGISKSSS SYQNCHLTAK QRTPSGNGKG VKVTDVRYAR IRGSSASDQD ITLNCDADLG CSDIVMDNVN MVSATFGHKL
401: FSSCKNAHGS LFASKVDCLK H

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FFI9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.