Factsheet for Bra011341.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
plasma membrane 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75239	Canola	cytosol	99.75	96.55
AT4G32370.1	Thale cress	extracellular	58.02	66.67
Bra040077.1-P	Field mustard	extracellular	46.56	50.14
PGSC0003DMT400056828	Potato	extracellular	39.19	38.69
Bra025099.1-P	Field mustard	extracellular	39.19	38.5
PGSC0003DMT400008955	Potato	extracellular	33.59	37.93
Bra025103.1-P	Field mustard	extracellular	37.91	37.25
TraesCS2B01G423400.1	Wheat	plastid	32.32	36.18
Bra023600.1-P	Field mustard	extracellular	39.19	35.98
Bra008572.1-P	Field mustard	extracellular	37.91	34.33
TraesCS2D01G402200.1	Wheat	extracellular	33.59	33.76
GSMUA_Achr11P...	Banana	extracellular	35.37	33.41
Bra029690.1-P	Field mustard	cytosol	34.1	33.0
TraesCS2A01G405600.1	Wheat	extracellular	26.46	32.6
HORVU2Hr1G096130.1	Barley	extracellular	33.33	32.35
GSMUA_Achr4P13200_001	Banana	extracellular	34.61	32.23
TraesCS2D01G402100.1	Wheat	extracellular	33.08	32.1
TraesCS2A01G405300.1	Wheat	extracellular, nucleus	33.08	32.1
Bra001279.1-P	Field mustard	extracellular	35.62	32.04
Bra027210.1-P	Field mustard	extracellular	37.15	32.02
TraesCS2B01G423300.1	Wheat	extracellular	32.57	31.92
TraesCS2A01G405100.1	Wheat	extracellular	33.84	31.89
Bra004655.1-P	Field mustard	extracellular	34.61	31.78
Bra027211.1-P	Field mustard	extracellular	36.39	31.71
TraesCS2D01G402300.1	Wheat	extracellular	26.72	31.53
TraesCS2B01G423200.1	Wheat	extracellular	34.1	31.53
Bra001605.1-P	Field mustard	extracellular	36.13	31.42
Bra007332.1-P	Field mustard	extracellular	33.84	30.79
TraesCS2D01G402000.1	Wheat	extracellular	33.33	30.61
Bra025631.1-P	Field mustard	extracellular	32.82	30.57
Bra008493.1-P	Field mustard	extracellular	30.03	30.26
Bra016911.1-P	Field mustard	extracellular	33.33	30.25
KXG26899	Sorghum	extracellular	32.32	30.24
GSMUA_Achr9P22320_001	Banana	extracellular	31.55	30.02
Bra003286.1-P	Field mustard	extracellular	32.57	29.56
Bra003555.1-P	Field mustard	extracellular	33.33	29.31
Bra016912.1-P	Field mustard	extracellular, nucleus, peroxisome	33.33	29.24
Bra024602.1-P	Field mustard	cytosol	32.57	28.96
Bra027926.1-P	Field mustard	extracellular	31.81	28.74
Bra008748.1-P	Field mustard	extracellular	32.06	28.7
Zm00001d039668_P001	Maize	plastid	31.81	28.6
Bra012375.1-P	Field mustard	cytosol	32.06	28.25
Bra016213.1-P	Field mustard	extracellular	32.82	27.62
Bra016345.1-P	Field mustard	extracellular	32.06	26.92
Bra018707.1-P	Field mustard	extracellular	31.81	26.48
Bra025216.1-P	Field mustard	extracellular	31.55	26.38
Bra032600.1-P	Field mustard	extracellular	32.82	26.27
Bra033328.1-P	Field mustard	extracellular	32.06	25.66
Bra000911.1-P	Field mustard	extracellular, vacuole	31.3	25.31
Os01t0172900-00	Rice	nucleus	17.56	23.39
Bra027148.1-P	Field mustard	extracellular	31.04	22.76
Bra031724.1-P	Field mustard	extracellular	29.77	22.72
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	30.28	22.41
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	29.77	21.95
GSMUA_Achr4P06370_001	Banana	extracellular	35.11	18.3

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EnsemblPlantsGene:Bra011341	EnsemblPlants:Bra011341.1	EnsemblPlants:Bra011341.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4D4D7	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375
PANTHER:PTHR31375:SF42	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126
UniParc:UPI000254643B	SEG:seg	:	:	:	:

Description

AT4G32375 (E=1e-124) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Coordinates

chrA01:-:2653473..2655675

Molecular Weight (calculated)

43190.4 Da

IEP (calculated)

8.529

GRAVY (calculated)

-0.350

Length

393 amino acids

Sequence
(BLAST)

001: MIILVSCHLE YGDGRRILRI KDFITDTNHK NVDYSQVFQK AWKGLCEGEG EGTGGSSLVI NENEKYTIQP QLFEGPCVSS YIHIQIDGKI EAPKRPKQWG
101: NKRTESWLMF KNVESLFING SGVLDPHGEN WWRSVRHSKR PRTLSFKQCT DIIYNGLTQY NSPKNHISVY GCTNATLSNL TLLAPEKSPN TDGIGISLSH
201: NIRILDSSIQ TGDDCIAITG GRGGSSDINI TRVACGPGHG ISIGSLGKGD IDDTVENVIV RSCSFWGTQN GARIKTWHGG KGLAKNILFE NITVTNTKYP
301: IIIDQHYSNG GTGHVKGNAV KVSDVTFRYI EGTSASKIAI KLDCDENQGC HNIVMEHIKL TSAKPGKKLS AYCKFADVKA SFVNIHINCG LYP

Best Arabidopsis Sequence Match ( AT4G32370.1 )
(BLAST)

001: MFNFFFTMKD FKTLFSLIIV ISYYFEYGEG QRILSIKDFI IDTNHTIIDY SQAFQEAWKG LCEDETPNGS ALVIRKNETY TLQPSTFRGP CVSSNIHIQI
101: DGKLEGPRKP IYWKNKENRS WLGFKDVEGL VINGSGVLNP HGEAWWKSVS LSKRPTTISF ASCMDIVYNG LHHINSPRNH ISIYGCTNAT LSNLDISAPE
201: DSPNTDGINI CLSHRIQILD SSIQTGDDCV AITGGRGGSS DINITGVACG PGHGISIGSL GKDNERDDIV ENVNVRSCSF TGTQNGARIK TWNGGRGLAK
301: NILYENITLI DAGYPIIINQ HYFDNKKKHY FDKSFLKVIF KL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JUA3]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.