Factsheet for Bra027926.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41695	Canola	extracellular	98.16	98.16
AT1G56710.1	Thale cress	extracellular	82.3	82.49
Bra032600.1-P	Field mustard	extracellular	57.01	50.51
Bra033328.1-P	Field mustard	extracellular	56.09	49.69
Bra000911.1-P	Field mustard	extracellular, vacuole	55.4	49.59
Bra018707.1-P	Field mustard	extracellular	52.18	48.09
Bra008748.1-P	Field mustard	extracellular	39.31	38.95
Bra003555.1-P	Field mustard	extracellular	40.0	38.93
Bra003286.1-P	Field mustard	extracellular	38.39	38.57
Bra004655.1-P	Field mustard	extracellular	37.7	38.32
Bra016911.1-P	Field mustard	extracellular	37.93	38.11
Bra024602.1-P	Field mustard	cytosol	38.16	37.56
Bra007332.1-P	Field mustard	extracellular	37.01	37.27
Bra012375.1-P	Field mustard	cytosol	37.93	37.0
Bra025216.1-P	Field mustard	extracellular	39.77	36.81
Bra016213.1-P	Field mustard	extracellular	39.08	36.4
Bra016912.1-P	Field mustard	extracellular, nucleus, peroxisome	37.47	36.38
Bra025631.1-P	Field mustard	extracellular	35.17	36.26
Bra016345.1-P	Field mustard	extracellular	38.85	36.11
Bra029690.1-P	Field mustard	cytosol	33.56	35.96
Bra031724.1-P	Field mustard	extracellular	41.61	35.15
Bra001279.1-P	Field mustard	extracellular	34.94	34.78
Bra008493.1-P	Field mustard	extracellular	30.8	34.36
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	41.84	34.27
Bra027148.1-P	Field mustard	extracellular	42.07	34.14
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	41.38	33.77
Bra025099.1-P	Field mustard	extracellular	31.03	33.75
Bra027211.1-P	Field mustard	extracellular	34.25	33.04
Bra027210.1-P	Field mustard	extracellular	34.25	32.68
Bra001605.1-P	Field mustard	extracellular	33.56	32.3
Bra025103.1-P	Field mustard	extracellular	29.66	32.25
Bra011341.1-P	Field mustard	cytosol	28.74	31.81
Bra023600.1-P	Field mustard	extracellular	31.26	31.78
Bra008572.1-P	Field mustard	extracellular	31.03	31.11
Bra040077.1-P	Field mustard	extracellular	22.07	26.3

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EnsemblPlantsGene:Bra027926	EnsemblPlants:Bra027926.1	EnsemblPlants:Bra027926.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4EGL2	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375
PANTHER:PTHR31375:SF13	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126
SignalP:SignalP-noTM	UniParc:UPI00025421B0	:	:	:	:

Description

AT1G56710 (E=4e-220) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Coordinates

chrA09:+:9901031..9903222

Molecular Weight (calculated)

47651.6 Da

IEP (calculated)

7.320

GRAVY (calculated)

-0.066

Length

435 amino acids

Sequence
(BLAST)

001: MSFASKLLYA FFLILLSSAR VTHNMNLSPS PAPNPAYYDD NNNASTVFDV TSFGAIGDCR TDDTSAFKMA WDTACMTIGV DSAVLLVPYT FCFLVKPTSF
101: NGPCRTRLTL QIDGIIVSPD GPKSWPWNFK RQWLMFYRVN GLSIQGSGLV NGRGQKWWDL PCKPHKGVNG TTQPGPCDSP VAIRIFQSSD VKIKGLTFKN
201: SAQFHVRFDN CDDVVVDSVT INAPASSPNT DGIHIENTHN VQIRNSVISN GDDCVSIGAG CFNVDIKNIT CGPSHGISIG SLGVHNSSAW VSNITVTNST
301: IWNSDNGVRI KTWQGGSGLV SRIVFRNILM VNVRNPIMID QYYCQTKNCA NQTSAVIISD VLYANIKGSY DLRSPPMHFG CSDSFPSTNL RLEDVDLFPY
401: KGQLFENPFC WNAYGSMQTV TVPPVNCLLE ALPGC

Best Arabidopsis Sequence Match ( AT1G56710.1 )
(BLAST)

001: MSLPNSLFYT FFLILFSTIR IAQSIYLSPS PAPNPAYNDN DNIAPTVFDV TSFGAIGDCS TDDTSAFKMA WDAACMSTGP KSALLLVPYT FCFLVKPTTF
101: NGPCRTNLVL QIDGFIVSPD GPRSWPSNYQ RQWMMFYRVN GLSIQGSGVI NGRGQKWWNL PCKPHKGLNG TTQTGPCDSP VAIRLFQSSK VRIQGINFMN
201: SAQFHVRFDN CSDVVVDSVI IKAPASSPNT DGIHIENTHN VQIRNSMISN GDDCISIGAG CFNVDIKNVT CGPSHGISIG SLGVHNSQAY VSNITVTNST
301: IWNSDNGVRI KTWQGGSGSV SRIVFSNILM VNVRNPIMID QYYCQTNNCA NQTSAVIISD VLYANIKGTY DLRSPPIHFG CSDSVPCTNL TLTEVDLFPS
401: KGQHLENPFC WNAYGSMKIT VPPVYCLLDA PPDF

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FXC1]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.