Factsheet for Bra008493.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37571	Canola	cytosol	93.08	97.06
AT1G80140.1	Thale cress	extracellular	68.46	79.46
Solyc12g009420.1.1	Tomato	extracellular	40.51	38.82
Bra029690.1-P	Field mustard	cytosol	35.13	33.74
Bra027211.1-P	Field mustard	extracellular	38.72	33.48
Bra001605.1-P	Field mustard	extracellular	38.72	33.41
Bra007332.1-P	Field mustard	extracellular	36.92	33.33
Bra003286.1-P	Field mustard	extracellular	36.41	32.79
Bra025099.1-P	Field mustard	extracellular	33.08	32.25
Bra027210.1-P	Field mustard	extracellular	37.69	32.24
Bra025631.1-P	Field mustard	extracellular	34.62	31.99
Bra008572.1-P	Field mustard	extracellular	34.62	31.11
Bra025103.1-P	Field mustard	extracellular	31.79	31.0
Bra027926.1-P	Field mustard	extracellular	34.36	30.8
Bra001279.1-P	Field mustard	extracellular	34.36	30.66
Bra023600.1-P	Field mustard	extracellular	33.59	30.61
Bra004655.1-P	Field mustard	extracellular	33.59	30.61
Bra016911.1-P	Field mustard	extracellular	33.85	30.48
Bra011341.1-P	Field mustard	cytosol	30.26	30.03
Zm00001d039668_P001	Maize	plastid	33.59	29.98
Bra000911.1-P	Field mustard	extracellular, vacuole	36.92	29.63
Bra003555.1-P	Field mustard	extracellular	33.85	29.53
Bra024602.1-P	Field mustard	cytosol	33.33	29.41
Bra012375.1-P	Field mustard	cytosol	33.59	29.37
Bra016213.1-P	Field mustard	extracellular	35.13	29.34
Bra025216.1-P	Field mustard	extracellular	34.87	28.94
Bra016912.1-P	Field mustard	extracellular, nucleus, peroxisome	33.08	28.79
Bra008748.1-P	Field mustard	extracellular	32.05	28.47
Bra018707.1-P	Field mustard	extracellular	34.1	28.18
Bra016345.1-P	Field mustard	extracellular	33.33	27.78
Bra040077.1-P	Field mustard	extracellular	25.9	27.67
Bra032600.1-P	Field mustard	extracellular	34.1	27.09
Bra033328.1-P	Field mustard	extracellular	33.85	26.88
Os01t0172900-00	Rice	nucleus	19.49	25.76
Bra031724.1-P	Field mustard	extracellular	32.82	24.85
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	33.85	24.77
Bra027148.1-P	Field mustard	extracellular	33.59	24.44
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	32.56	23.92

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EnsemblPlantsGene:Bra008493	EnsemblPlants:Bra008493.1	EnsemblPlants:Bra008493.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0016798	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4CW96	PFAM:PF00295	PANTHER:PTHR31375
PANTHER:PTHR31375:SF97	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI0002546C56
SEG:seg	:	:	:	:	:

Description

AT1G80140 (E=3e-148) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Coordinates

chrA02:-:15954813..15956676

Molecular Weight (calculated)

42208.7 Da

IEP (calculated)

8.171

GRAVY (calculated)

-0.071

Length

390 amino acids

Sequence
(BLAST)

001: MDLVLIVFVA VLGLPWLSYG ESVMKYGAVG DGISDDTSAL QKAWDSACNG SSKIGSVYVP AGKVFLLKSL HFTGPCKLKP LIFTIDGEMK AQSDPNKWQK
101: GENGIIPWLI FERVEGLLLS GRGLLDGQGK GWWDIHCRDH PGPNCIWLAP TMMTFSNCRN VILKSLRFRN SAQSHILVMG SQNVHIKDVK IKSPEISPNT
201: DGVHITSSSA VSITHSDFAT GDQVHNLSVT YVNCGPGHGV SVGSLGRGGT EVEVEDIRVA HVNFTGTTNG ARIKTWPGGT GYVRGIEFFD IRFSNVQNPI
301: IIDQFYGCAP NCVRTEKAVH IEKVKYMKMS GTSRTEVAMK LECSGKNACS NVFMRDIDLS PANGIGSVSS TCSFVQGSTQ GTIRPSSCIQ

Best Arabidopsis Sequence Match ( AT1G80140.1 )
(BLAST)

001: MGSVNVPAGK VFLLNSLHFT GPCIPKPLLF IIDGEMIAQS DPQKWGNGEN GVIPWLIFDQ VDGLAIVGRG LLDGQGKSWW DIHCRDHPGP MMTFSNCGNV
101: TLKSLRFRNS AQTHVLVMGS QNVYIDDIKI TSPEASPNTD GIHITSSTAV SINHSDIATG DDCVSIGDQV NNLNVTFMNC GPGHGVSIGS LGRGGTEVTV
201: ENIRVSHVNF TGTTNGARIK TWPGGTGYVR GIEFFDIRFS SVQNPIIIDQ FYGCAPTCVE TMKGVHIEKV RYMKMSGTSA TKVAMKLECS GESVPCSNLF
301: MRDIDLSPAD GIDSVSSLCS FAHGSAQGII RPLSCF

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HS31]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.