Factsheet for Bra008748.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69569	Canola	extracellular	99.32	99.32
CDY09873	Canola	extracellular	97.72	97.72
AT5G14650.1	Thale cress	extracellular	87.7	88.51
KRH56581	Soybean	extracellular	64.24	64.24
KRG93260	Soybean	extracellular	64.69	64.11
Os01t0637500-00	Rice	cytosol, extracellular	45.79	59.47
Os05t0578600-01	Rice	cytosol, extracellular	42.14	59.29
VIT_14s0066g01060.t01	Wine grape	extracellular	64.69	58.8
Solyc07g015870.2.1	Tomato	extracellular	57.86	56.57
PGSC0003DMT400077010	Potato	cytosol	59.23	56.16
HORVU3Hr1G031180.1	Barley	extracellular	17.77	55.32
GSMUA_Achr4P02960_001	Banana	extracellular	59.0	54.53
GSMUA_Achr5P09080_001	Banana	extracellular	59.45	53.59
GSMUA_Achr6P22080_001	Banana	extracellular	59.0	53.4
GSMUA_Achr1P27280_001	Banana	extracellular	59.23	50.98
Bra031724.1-P	Field mustard	extracellular	59.68	50.87
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	61.05	50.47
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	60.82	50.09
TraesCS1A01G418000.1	Wheat	extracellular	57.63	49.61
Bra027148.1-P	Field mustard	extracellular	59.91	49.07
EES01142	Sorghum	extracellular	59.45	49.06
HORVU3Hr1G056270.10	Barley	extracellular	59.23	48.87
Os01t0636500-01	Rice	extracellular	59.45	48.51
Zm00001d044110_P001	Maize	extracellular	59.45	48.16
TraesCS3A01G225800.2	Wheat	extracellular	59.0	48.05
TraesCS1D01G425600.1	Wheat	extracellular	57.63	48.01
TraesCS1B01G448100.1	Wheat	extracellular	57.86	47.92
EES20001	Sorghum	extracellular	58.54	47.86
Zm00001d011444_P002	Maize	extracellular	58.77	47.69
TraesCS3B01G258600.2	Wheat	extracellular	58.31	47.67
TraesCS3D01G223900.1	Wheat	extracellular	58.09	47.57
Zm00001d009667_P001	Maize	extracellular, mitochondrion, plastid	54.9	46.71
HORVU1Hr1G091430.5	Barley	extracellular	57.86	45.85
Bra025216.1-P	Field mustard	extracellular	44.19	41.28
Bra018707.1-P	Field mustard	extracellular	43.74	40.68
Bra027926.1-P	Field mustard	extracellular	38.95	39.31
Bra033328.1-P	Field mustard	extracellular	42.6	38.09
Bra024602.1-P	Field mustard	cytosol	38.27	38.01
Bra032600.1-P	Field mustard	extracellular	42.37	37.88
Bra000911.1-P	Field mustard	extracellular, vacuole	41.91	37.86
Bra029690.1-P	Field mustard	cytosol	34.62	37.44
Bra007332.1-P	Field mustard	extracellular	36.67	37.27
Bra025099.1-P	Field mustard	extracellular	33.94	37.25
Bra012375.1-P	Field mustard	cytosol	37.81	37.22
Bra003286.1-P	Field mustard	extracellular	36.67	37.18
Bra016345.1-P	Field mustard	extracellular	39.64	37.18
Bra003555.1-P	Field mustard	extracellular	37.81	37.14
Bra004655.1-P	Field mustard	extracellular	35.99	36.92
Bra025631.1-P	Field mustard	extracellular	35.31	36.73
Bra025103.1-P	Field mustard	extracellular	33.26	36.5
Bra016911.1-P	Field mustard	extracellular	35.99	36.49
Bra016213.1-P	Field mustard	extracellular	38.72	36.4
Bra001279.1-P	Field mustard	extracellular	35.76	35.93
Bra016912.1-P	Field mustard	extracellular, nucleus, peroxisome	35.31	34.6
Bra023600.1-P	Field mustard	extracellular	32.12	32.94
Bra001605.1-P	Field mustard	extracellular	33.71	32.74
Bra011341.1-P	Field mustard	cytosol	28.7	32.06
Bra008493.1-P	Field mustard	extracellular	28.47	32.05
Bra027211.1-P	Field mustard	extracellular	32.57	31.71
Bra027210.1-P	Field mustard	extracellular	32.8	31.58
Bra008572.1-P	Field mustard	extracellular	30.3	30.65
Bra040077.1-P	Field mustard	extracellular	21.87	26.3

Protein Annotations

Gene3D:2.160.20.10	MapMan:21.3.5.1.3	EnsemblPlantsGene:Bra008748	EnsemblPlants:Bra008748.1	EnsemblPlants:Bra008748.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4CX01	PFAM:PF00295	PANTHER:PTHR31375	PANTHER:PTHR31375:SF34
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM
UniParc:UPI00025451A9	SEG:seg	:	:	:	:

Description

AT5G14650 (E=3e-139) | polygalacturonase, putative / pectinase, putative

Coordinates

chrA10:-:13683729..13685685

Molecular Weight (calculated)

47150.5 Da

IEP (calculated)

5.644

GRAVY (calculated)

-0.282

Length

439 amino acids

Sequence
(BLAST)

001: MYSLTLKCLA LKLLLLISCD ARHSVYWRGN RRSNAEGGSS GTFNVLDYGA KGDGTSDDTK AFEDAWNEAC KVAASTLLVP SGSTFLVGPV SFLGKECKEN
101: IVFQLDGKII APTSSSVWGS GLLQWMEFKS LTGITIKGKG VIDGQGSVWW NKSPDYDPAD ENDMMKDRKG TKMPGTKPTA LRFYGSNGVM VNGITIQNSP
201: QTHLKFDNCV NIQVSDFTTS SPGDSPNTDG IHLQNSQDAV IYRSTLACGD DCISIQTGCS NIYIHDVDCG PGHGISIGGL GKENTKACVS NITVRDVTMH
301: ETTNGVRIKS WQGGSGSVKQ VMFSNIQVSE VANPIVIDQY YCDGGGCHNE TSAVAVSNIN YINIKGTYTR EPVRFACSDS LPCTGISLST IELKPATDKA
401: SSSEPFCWEA HGELKTETLP PIQCLKTEKS TSQSSNDAC

Best Arabidopsis Sequence Match ( AT5G14650.1 )
(BLAST)

001: MCRLTLKCLS LNFLLLISLF SSRFGTCDAR YSVYWKGNRR SIAEGGSSGT INVLDHGAKG DGTSDDTKAF EDAWQVACKV AASTLLVPSG STFLVGPVSF
101: LGKECKEKIV FQLEGKIIAP TSASAWGSGL LQWIEFKALQ GITIKGKGII DGRGSVWWND MMGTKMPRTK PTALRFYGSN GVTVSGITIQ NSPQTHLKFD
201: NCISIQVSDF TTSSPGDSPN TDGIHLQNSQ DAVIYRSTLA CGDDCISIQT GCSNINIHDV DCGPGHGISI GGLGKDNTKA CVSNITVRDV TMHETTNGVR
301: IKSWQGGSGS VKQVMFSNIQ VSNVANPIII DQYYCDGGGC HNETSAVAVS NINYINIKGT YTKEPVRFAC SDSLPCTGIS LSTIELKPAT GKASSLDPFC
401: WKAHGELKTK TLPPIQCLKT EKSPEAASRS NNDAC

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYJ5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.